Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16020 and ABZR87_RS16025 are separated by 79 nucleotidesABZR87_RS16025 and ABZR87_RS16030 are separated by 78 nucleotidesABZR87_RS16030 and ABZR87_RS16035 are separated by 89 nucleotidesABZR87_RS16035 and ABZR87_RS16040 are separated by 32 nucleotides ABZR87_RS16020: ABZR87_RS16020 - tRNA-Ser, at 3,387,151 to 3,387,240 _RS16020 ABZR87_RS16025: ABZR87_RS16025 - serine--tRNA ligase, at 3,387,320 to 3,388,636 _RS16025 ABZR87_RS16030: ABZR87_RS16030 - replication-associated recombination protein A, at 3,388,715 to 3,390,022 _RS16030 ABZR87_RS16035: ABZR87_RS16035 - MFS transporter, at 3,390,112 to 3,391,416 _RS16035 ABZR87_RS16040: ABZR87_RS16040 - agmatinase, at 3,391,449 to 3,392,408 _RS16040
Group Condition ABZR87_RS16020 ABZR87_RS16025 ABZR87_RS16030 ABZR87_RS16035 ABZR87_RS16040
root root EcoFAB sample 2; outgrowth in LB N.D. N.D. -0.4 -0.1 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.4 -0.1 -0.3
carbon source Trans-2-methyl-2-butenoic (C) N.D. N.D. -0.1 -0.3 -0.3
nitrogen source nitrogen source nitrate 5mM N.D. N.D. -0.3 -0.1 -0.3
carbon source Octanoic (C) N.D. N.D. -0.3 +0.1 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. N.D. -0.0 -0.2 -0.3
carbon source L-Glutamic (C) N.D. N.D. -0.1 -0.1 -0.3
nitrogen source nitrogen source nitrate 20mM N.D. N.D. +0.1 -0.3 -0.2
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. -0.2 +0.0 -0.3
carbon source Pimelic (C) N.D. N.D. +0.1 -0.2 -0.2
carbon source Beta-alanine (C) N.D. N.D. -0.2 -0.2 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -0.2 +0.2 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. N.D. -0.0 +0.1 -0.3
phage Ra1_0.01 N.D. N.D. -0.2 -0.2 +0.1
root root sample 6; outgrowth in LB N.D. N.D. +0.2 -0.1 -0.3
micoeukaryotes Acanthamoeba sp., muxed culture-1 N.D. N.D. +0.1 +0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.1 +0.2 -0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. N.D. +0.1 +0.1 -0.2
carbon source Sebacic (C) N.D. N.D. -0.2 -0.0 +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. -0.2 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.2 +0.7 -0.3
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. N.D. +0.1 -0.2 +0.4
carbon source Protocatechuic Acid (C) N.D. N.D. +0.2 +0.2 -0.1
carbon source Octanoic (C) N.D. N.D. -0.1 +0.3 +0.2
root root sample 4; outgrowth in LB N.D. N.D. +0.4 -0.0 +0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. N.D. +0.2 +0.2 +0.1
soil soil sample 1; outgrowth in LB N.D. N.D. +0.3 +0.2 +0.2
root root sample 5; outgrowth in LB N.D. N.D. +0.3 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.3 +0.0 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.0 +0.7 +0.6
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ABZR87_RS16025
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