Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15980 and ABZR87_RS15985 are separated by 20 nucleotidesABZR87_RS15985 and ABZR87_RS15990 are separated by 262 nucleotidesABZR87_RS15990 and ABZR87_RS15995 are separated by 285 nucleotidesABZR87_RS15995 and ABZR87_RS16000 overlap by 4 nucleotides ABZR87_RS15980: ABZR87_RS15980 - beta-propeller fold lactonase family protein, at 3,376,092 to 3,377,165 _RS15980 ABZR87_RS15985: ABZR87_RS15985 - TonB-dependent receptor, at 3,377,186 to 3,379,807 _RS15985 ABZR87_RS15990: ABZR87_RS15990 - aldehyde dehydrogenase family protein, at 3,380,070 to 3,381,590 _RS15990 ABZR87_RS15995: ABZR87_RS15995 - quinoprotein dehydrogenase-associated SoxYZ-like carrier, at 3,381,876 to 3,382,655 _RS15995 ABZR87_RS16000: ABZR87_RS16000 - quinoprotein relay system zinc metallohydrolase 1, at 3,382,652 to 3,383,599 _RS16000
Group Condition ABZR87_RS15980 ABZR87_RS15985 ABZR87_RS15990 ABZR87_RS15995 ABZR87_RS16000
soil soil sample 5; outgrowth in LB -0.1 -0.8 -1.9 -0.4 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.7 -1.8 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 -1.6 -0.1 -0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.5 -0.9 -0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.3 -0.4 -0.7 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 -1.4 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 -1.1 +0.4 -0.3
rhizosphere rhizosphere sample 5; outgrowth in LB -0.0 -0.4 -0.9 +0.1 -0.1
carbon source Pimelic (C) -0.3 -0.3 -0.5 -0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.2 -0.7 -0.3 -0.2
rhizosphere rhizosphere sample 4; outgrowth in LB -0.1 -0.4 -0.9 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.2 -0.5 -0.4 -0.6
carbon source Pimelic (C) -0.3 -0.3 -0.6 +0.1 -0.0
carbon source Glycerol (C) -0.1 -0.3 -0.5 -0.0 -0.2
carbon source Beta-alanine (C) -0.3 -0.2 -0.6 +0.0 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 -1.0 -0.3 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 -0.8 -0.2 -0.1
soil soil sample 1; outgrowth in LB +0.2 -0.0 -0.8 -0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.0 -0.7 +0.4 -0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.0 -1.0 +0.1 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB +0.4 -0.1 -0.9 +0.1 +0.1
soil soil sample 2; outgrowth in LB -0.1 -0.1 -0.5 +0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 -0.0 -0.5 +0.4 -0.5
rhizosphere rhizosphere sample 6; outgrowth in LB +0.3 -0.3 -0.5 +0.2 -0.2
carbon source Sebacic (C) -0.2 -0.2 -0.0 +0.4 -0.3
carbon source Octanoic (C) -0.7 -0.1 +0.1 +0.1 +0.3
carbon source D-Glucose (C) -0.3 -0.0 -0.3 +0.3 +0.1
carbon source Suberic (C) -0.1 -0.0 -0.4 -0.1 +0.4
carbon source Azelaic (C) +0.0 +0.1 -0.3 -0.3 +0.4
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -0.1 -0.2 +0.6 +0.3
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