Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15865 and ABZR87_RS15870 overlap by 1 nucleotidesABZR87_RS15870 and ABZR87_RS15875 are separated by 72 nucleotidesABZR87_RS15875 and ABZR87_RS15880 overlap by 14 nucleotidesABZR87_RS15880 and ABZR87_RS15885 are separated by 462 nucleotides ABZR87_RS15865: ABZR87_RS15865 - PelD GGDEF domain-containing protein, at 3,350,398 to 3,351,897 _RS15865 ABZR87_RS15870: ABZR87_RS15870 - hypothetical protein, at 3,351,897 to 3,352,457 _RS15870 ABZR87_RS15875: ABZR87_RS15875 - tetratricopeptide repeat protein, at 3,352,530 to 3,356,618 _RS15875 ABZR87_RS15880: ABZR87_RS15880 - bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein, at 3,356,605 to 3,359,466 _RS15880 ABZR87_RS15885: ABZR87_RS15885 - hemolysin family protein, at 3,359,929 to 3,361,245 _RS15885
Group Condition ABZR87_RS15865 ABZR87_RS15870 ABZR87_RS15875 ABZR87_RS15880 ABZR87_RS15885
carbon source 4-Hydroxybenzoic Acid (C) -2.9 -3.4 -3.6 -3.3 +0.0
carbon source Sebacic (C) -0.8 -1.2 -1.1 -1.1 +0.5
carbon source Octanoic (C) -0.5 -0.7 -0.7 -0.7 +0.0
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.5 -0.2 -0.5 -0.6 +0.1
carbon source Dodecandioic (C) -0.6 -0.4 -0.1 -0.4 -0.1
carbon source Octanoic (C) -0.2 -0.2 -0.4 -0.5 +0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.2 +0.3 +0.4 +0.2 -0.6
root root EcoFAB sample 2; outgrowth in LB +0.7 +0.1 +0.2 +0.0 -0.5
root root EcoFAB sample 1; outgrowth in LB +0.3 +0.4 +0.2 +0.1 -0.3
soil soil sample 9; outgrowth in LB +0.3 +0.2 +0.4 +0.4 -0.1
soil soil sample 1; outgrowth in LB +0.4 +0.2 +0.5 +0.3 -0.2
soil soil EcoFAB sample 2; outgrowth in LB +0.7 +0.5 +0.7 +0.6 -1.0
phage Ra1_0.01 +0.6 +0.6 +0.4 +0.4 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.8 +0.7 +0.4 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.1 +0.4 +0.7 +0.4 -0.1
carbon source Heptanoic (C) +0.6 +0.8 +1.1 +0.7 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +1.2 +1.0 +0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.1 +0.6 +0.7 +0.4 -0.0
phage Ra3_0.1 +0.7 +0.8 +0.7 +0.8 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 +0.6 +1.0 +0.5 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 +1.0 +1.0 +0.4 -0.3
carbon source Heptanoic (C) +0.6 +1.2 +1.2 +0.9 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 +1.2 +0.9 +0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 +1.4 +1.3 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.1 +1.2 +1.2 +0.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.4 +1.3 +1.1 +0.6 +0.1
phage Ra1_0.1 +1.4 +1.3 +1.3 +1.3 -0.4
phage Ra3_1 +1.5 +1.3 +1.3 +1.5 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.7 +1.7 +1.8 +1.9 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +4.4 +4.2 +4.4 +1.6 -0.2
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ABZR87_RS15865
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ABZR87_RS15870
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ABZR87_RS15880
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ABZR87_RS15885
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