Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15840 and ABZR87_RS15845 are separated by 473 nucleotidesABZR87_RS15845 and ABZR87_RS15850 are separated by 909 nucleotidesABZR87_RS15850 and ABZR87_RS15855 overlap by 1 nucleotidesABZR87_RS15855 and ABZR87_RS15860 overlap by 4 nucleotides ABZR87_RS15840: ABZR87_RS15840 - D-amino acid dehydrogenase, at 3,342,210 to 3,343,478 _RS15840 ABZR87_RS15845: ABZR87_RS15845 - methyl-accepting chemotaxis protein, at 3,343,952 to 3,345,487 _RS15845 ABZR87_RS15850: ABZR87_RS15850 - exopolysaccharide Pel transporter PelG, at 3,346,397 to 3,347,767 _RS15850 ABZR87_RS15855: ABZR87_RS15855 - GT4 family glycosyltransferase PelF, at 3,347,767 to 3,349,389 _RS15855 ABZR87_RS15860: ABZR87_RS15860 - LPS N-acetylglucosaminyl transferase, at 3,349,386 to 3,350,372 _RS15860
Group Condition ABZR87_RS15840 ABZR87_RS15845 ABZR87_RS15850 ABZR87_RS15855 ABZR87_RS15860
carbon source 4-Hydroxybenzoic Acid (C) -0.6 +0.0 -3.4 -4.1 -2.7
carbon source Sebacic (C) -0.2 +0.1 -1.3 -1.6 -0.8
carbon source Octanoic (C) -0.3 +0.0 -0.5 -0.6 -0.5
carbon source Octanoic (C) +0.2 -0.5 -0.1 -0.1 -0.8
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.0 +0.2 -0.5 -0.5 -0.5
soil soil sample 9; outgrowth in LB +0.1 -0.3 +0.5 +0.2 +0.5
soil soil sample 2; outgrowth in LB +0.1 -0.2 +0.4 +0.4 +0.3
soil soil sample 3; outgrowth in LB +0.1 -0.2 +0.5 +0.4 +0.3
soil soil sample 5; outgrowth in LB +0.2 -0.0 +0.4 +0.3 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 +0.3 +0.3 +0.2 +0.0
phage Ra1_0.01 -0.1 +0.1 +0.6 +0.4 +0.5
soil soil sample 1; outgrowth in LB +0.1 +0.1 +0.6 +0.5 +0.3
phage Ra3_0.1 -0.2 -0.2 +0.8 +0.7 +0.7
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.1 +0.6 +0.7 +0.6
carbon source Heptanoic (C) +0.1 -0.2 +1.1 +1.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.1 +0.9 +0.9 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 +1.0 +0.8 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 +1.1 +1.0 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.2 +0.9 +0.8 +0.9
carbon source Heptanoic (C) +0.1 -0.1 +1.1 +1.1 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +0.9 +1.0 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 +1.2 +1.2 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 +1.2 +1.1 +0.9
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.1 +1.1 +1.0 +1.1
phage Ra3_1 -0.1 -0.2 +1.5 +1.3 +1.4
phage Ra1_0.1 +0.1 -0.3 +1.5 +1.3 +1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.4 +1.2 +1.0 +1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.3 +0.9 +1.5 +1.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 -0.2 +1.9 +1.9 +1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +4.5 +4.9 +4.3
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ABZR87_RS15840
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ABZR87_RS15845
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ABZR87_RS15855
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ABZR87_RS15860
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