Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15710 and ABZR87_RS15715 are separated by 41 nucleotidesABZR87_RS15715 and ABZR87_RS15720 are separated by 131 nucleotidesABZR87_RS15720 and ABZR87_RS15725 are separated by 470 nucleotidesABZR87_RS15725 and ABZR87_RS15730 are separated by 347 nucleotides ABZR87_RS15710: ABZR87_RS15710 - valine--tRNA ligase, at 3,315,994 to 3,318,870 _RS15710 ABZR87_RS15715: ABZR87_RS15715 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 3,318,912 to 3,319,784 _RS15715 ABZR87_RS15720: ABZR87_RS15720 - hypothetical protein, at 3,319,916 to 3,320,911 _RS15720 ABZR87_RS15725: ABZR87_RS15725 - translation initiation factor IF-1, at 3,321,382 to 3,321,600 _RS15725 ABZR87_RS15730: ABZR87_RS15730 - hypothetical protein, at 3,321,948 to 3,322,241 _RS15730
Group Condition ABZR87_RS15710 ABZR87_RS15715 ABZR87_RS15720 ABZR87_RS15725 ABZR87_RS15730
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.6 -0.0 N.D. -0.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -2.8 +0.2 N.D. -0.6
soil soil sample 8; outgrowth in LB N.D. -3.0 +0.0 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.9 +0.1 N.D. -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -2.5 +0.1 N.D. -0.7
root root sample 4; outgrowth in LB N.D. -3.0 +0.0 N.D. +0.1
root root sample 6; outgrowth in LB N.D. -2.6 +0.1 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.2 -0.0 N.D. -0.5
soil soil sample 4; outgrowth in LB N.D. -2.3 -0.1 N.D. -0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -1.6 -0.0 N.D. -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.3 +0.1 N.D. -0.4
soil soil sample 7; outgrowth in LB N.D. -2.7 -0.0 N.D. +0.3
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. -2.5 -0.0 N.D. +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -2.5 +0.0 N.D. +0.1
soil soil sample 5; outgrowth in LB N.D. -2.9 +0.0 N.D. +0.5
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -2.4 +0.0 N.D. +0.1
root root sample 5; outgrowth in LB N.D. -2.9 -0.1 N.D. +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.0 +0.1 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.5 +0.3 N.D. +0.0
soil soil sample 6; outgrowth in LB N.D. -2.8 +0.0 N.D. +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.2 -0.1 N.D. +0.2
soil soil sample 3; outgrowth in LB N.D. -2.4 +0.2 N.D. +0.3
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -2.4 +0.1 N.D. +0.4
soil soil sample 2; outgrowth in LB N.D. -2.1 -0.1 N.D. +0.3
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. -2.3 +0.1 N.D. +0.5
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -2.0 -0.1 N.D. +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -2.0 +0.1 N.D. +0.4
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -2.1 +0.0 N.D. +0.7
carbon source Octanoic (C) N.D. +1.9 -0.2 N.D. -1.5
carbon source Octanoic (C) N.D. +2.2 +0.1 N.D. -0.9
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