Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15695 and ABZR87_RS15700 overlap by 10 nucleotidesABZR87_RS15700 and ABZR87_RS15705 are separated by 25 nucleotidesABZR87_RS15705 and ABZR87_RS15710 are separated by 150 nucleotidesABZR87_RS15710 and ABZR87_RS15715 are separated by 41 nucleotides ABZR87_RS15695: ABZR87_RS15695 - homoserine kinase, at 3,311,665 to 3,312,669 _RS15695 ABZR87_RS15700: ABZR87_RS15700 - BPSS1780 family membrane protein, at 3,312,660 to 3,313,457 _RS15700 ABZR87_RS15705: ABZR87_RS15705 - UvrD-helicase domain-containing protein, at 3,313,483 to 3,315,843 _RS15705 ABZR87_RS15710: ABZR87_RS15710 - valine--tRNA ligase, at 3,315,994 to 3,318,870 _RS15710 ABZR87_RS15715: ABZR87_RS15715 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 3,318,912 to 3,319,784 _RS15715
Group Condition ABZR87_RS15695 ABZR87_RS15700 ABZR87_RS15705 ABZR87_RS15710 ABZR87_RS15715
soil soil sample 8; outgrowth in LB N.D. -0.2 -2.1 N.D. -3.0
soil soil sample 6; outgrowth in LB N.D. -0.1 -1.9 N.D. -2.8
soil soil sample 7; outgrowth in LB N.D. -0.1 -1.7 N.D. -2.7
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.2 -1.8 N.D. -2.5
soil soil sample 5; outgrowth in LB N.D. +0.1 -1.5 N.D. -2.9
soil soil sample 3; outgrowth in LB N.D. -0.2 -1.5 N.D. -2.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.2 -1.7 N.D. -2.1
soil soil sample 4; outgrowth in LB N.D. -0.2 -1.4 N.D. -2.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.5 -1.9 N.D. -1.5
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +0.0 -2.1 N.D. -1.6
soil soil sample 2; outgrowth in LB N.D. +0.0 -1.6 N.D. -2.1
root root sample 4; outgrowth in LB N.D. -0.1 -0.5 N.D. -3.0
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. +0.1 -1.3 N.D. -2.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. +0.0 -1.6 N.D. -1.9
soil soil sample 1; outgrowth in LB N.D. -0.0 -1.3 N.D. -2.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.2 -0.4 N.D. -2.8
soil soil sample 9; outgrowth in LB N.D. -0.1 -1.3 N.D. -2.0
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. +0.2 -1.2 N.D. -2.4
carbon source 3-Hydroxypropionate (C) N.D. -0.1 -1.3 N.D. -2.0
root root sample 5; outgrowth in LB N.D. +0.4 -0.7 N.D. -2.9
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.2 -0.5 N.D. -2.4
root root EcoFAB sample 2; outgrowth in LB N.D. -0.4 -1.5 N.D. -1.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.3 -0.3 N.D. -2.5
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.0 -2.1 N.D. -0.9
root root EcoFAB sample 1; outgrowth in LB N.D. +0.2 -1.5 N.D. -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 +0.3 N.D. -2.9
root root sample 6; outgrowth in LB N.D. -0.7 +0.9 N.D. -2.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.8 N.D. -2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 +1.6 N.D. -2.5
carbon source Octanoic (C) N.D. +0.7 -0.9 N.D. +1.9
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