Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS15690 and ABZR87_RS15695 are separated by 85 nucleotidesABZR87_RS15695 and ABZR87_RS15700 overlap by 10 nucleotidesABZR87_RS15700 and ABZR87_RS15705 are separated by 25 nucleotidesABZR87_RS15705 and ABZR87_RS15710 are separated by 150 nucleotides ABZR87_RS15690: ABZR87_RS15690 - hypothetical protein, at 3,311,151 to 3,311,579 _RS15690 ABZR87_RS15695: ABZR87_RS15695 - homoserine kinase, at 3,311,665 to 3,312,669 _RS15695 ABZR87_RS15700: ABZR87_RS15700 - BPSS1780 family membrane protein, at 3,312,660 to 3,313,457 _RS15700 ABZR87_RS15705: ABZR87_RS15705 - UvrD-helicase domain-containing protein, at 3,313,483 to 3,315,843 _RS15705 ABZR87_RS15710: ABZR87_RS15710 - valine--tRNA ligase, at 3,315,994 to 3,318,870 _RS15710
Group Condition ABZR87_RS15690 ABZR87_RS15695 ABZR87_RS15700 ABZR87_RS15705 ABZR87_RS15710
carbon source Sebacic (C) -1.0 N.D. +0.0 -1.6 N.D.
soil soil sample 8; outgrowth in LB -0.2 N.D. -0.2 -2.1 N.D.
phage Ra1_0.01 -0.3 N.D. +0.1 -2.3 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -0.4 N.D. -0.0 -2.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 N.D. -0.5 -1.9 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.3 N.D. -0.2 -1.7 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.1 N.D. +0.0 -2.1 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 N.D. -0.2 -1.8 N.D.
soil soil sample 6; outgrowth in LB -0.1 N.D. -0.1 -1.9 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.4 N.D. -0.7 -1.8 N.D.
soil soil sample 5; outgrowth in LB -0.5 N.D. +0.1 -1.5 N.D.
carbon source D-Xylose (C) -0.1 N.D. +0.3 -2.1 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.2 N.D. -0.1 -2.0 N.D.
phage Ra3_0.01 -0.3 N.D. -0.4 -1.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -1.3 N.D. +0.1 -0.7 N.D.
soil soil sample 2; outgrowth in LB -0.3 N.D. +0.0 -1.6 N.D.
carbon source Protocatechuic Acid (C) -0.2 N.D. -0.0 -1.5 N.D.
root root EcoFAB sample 2; outgrowth in LB +0.1 N.D. -0.4 -1.5 N.D.
carbon source Pimelic (C) -0.3 N.D. +0.1 -1.5 N.D.
carbon source acetate (C) -0.2 N.D. +0.1 -1.5 N.D.
nitrogen source nitrogen source nitrite 1mM -0.5 N.D. +0.1 -1.2 N.D.
root root EcoFAB sample 1; outgrowth in LB -0.2 N.D. +0.2 -1.5 N.D.
carbon source Octanoic (C) -1.3 N.D. +0.7 -0.9 N.D.
phage Ra3_0.1 +0.3 N.D. +0.1 -1.8 N.D.
carbon source Protocatechuic Acid (C) -0.1 N.D. +0.3 -1.5 N.D.
soil soil sample 7; outgrowth in LB +0.6 N.D. -0.1 -1.7 N.D.
nitrogen source nitrogen source nitrate 20mM +0.5 N.D. -0.1 -1.6 N.D.
root root sample 5; outgrowth in LB -0.8 N.D. +0.4 -0.7 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.6 N.D. +0.3 -1.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 N.D. -0.2 +1.6 N.D.
remove
ABZR87_RS15690
plot		 remove
ABZR87_RS15695
plot		 remove
ABZR87_RS15700		 remove
ABZR87_RS15705
plot		 remove
ABZR87_RS15710
plot