Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15680 and ABZR87_RS15685 are separated by 4 nucleotidesABZR87_RS15685 and ABZR87_RS15690 are separated by 94 nucleotidesABZR87_RS15690 and ABZR87_RS15695 are separated by 85 nucleotidesABZR87_RS15695 and ABZR87_RS15700 overlap by 10 nucleotides ABZR87_RS15680: ABZR87_RS15680 - DNA polymerase I, at 3,307,285 to 3,310,098 _RS15680 ABZR87_RS15685: ABZR87_RS15685 - TIGR00730 family Rossman fold protein, at 3,310,103 to 3,311,056 _RS15685 ABZR87_RS15690: ABZR87_RS15690 - hypothetical protein, at 3,311,151 to 3,311,579 _RS15690 ABZR87_RS15695: ABZR87_RS15695 - homoserine kinase, at 3,311,665 to 3,312,669 _RS15695 ABZR87_RS15700: ABZR87_RS15700 - BPSS1780 family membrane protein, at 3,312,660 to 3,313,457 _RS15700
Group Condition ABZR87_RS15680 ABZR87_RS15685 ABZR87_RS15690 ABZR87_RS15695 ABZR87_RS15700
carbon source Octanoic (C) -0.9 -4.1 -1.2 N.D. +0.0
carbon source Octanoic (C) -0.7 -4.7 -1.3 N.D. +0.7
carbon source Sebacic (C) -0.3 -4.2 -1.0 N.D. +0.0
carbon source Heptanoic (C) -0.6 -3.3 -0.4 N.D. -0.4
carbon source Heptanoic (C) -0.6 -3.3 -0.6 N.D. -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.6 -1.4 -0.9 N.D. -0.2
soil soil EcoFAB sample 2; outgrowth in LB -2.2 -1.1 -0.4 N.D. -0.0
soil soil EcoFAB sample 1; outgrowth in LB -2.3 -0.9 +0.4 N.D. -0.7
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -1.9 -1.3 N.D. +0.1
root root EcoFAB sample 2; outgrowth in LB -2.2 -1.1 +0.1 N.D. -0.4
carbon source Dodecandioic (C) -0.2 -3.1 -0.2 N.D. +0.1
carbon source Dodecandioic (C) -0.1 -3.1 -0.1 N.D. +0.0
root root EcoFAB sample 1; outgrowth in LB -1.8 -1.4 -0.2 N.D. +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -1.8 -0.4 -0.4 N.D. -0.3
soil soil sample 5; outgrowth in LB -2.1 -0.4 -0.5 N.D. +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -1.8 -1.2 +0.2 N.D. -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -1.7 +0.1 N.D. -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.3 -1.1 -0.1 N.D. +0.0
carbon source Sebacic (C) -0.2 -1.9 -0.3 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -1.0 -0.3 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -1.3 +0.9 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.6 -0.2 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 -0.7 -0.3 N.D. +0.2
soil soil sample 9; outgrowth in LB -1.3 -0.5 -0.2 N.D. -0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.1 -0.6 -0.2 N.D. -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.0 -0.9 +0.6 N.D. +0.3
root root sample 5; outgrowth in LB -0.8 -0.6 -0.8 N.D. +0.4
root root sample 6; outgrowth in LB -1.4 +0.3 +0.0 N.D. -0.7
rhizosphere rhizosphere sample 3; outgrowth in LB -0.9 -0.7 +0.9 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.9 -0.0 N.D. +0.6
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