Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS15600 and ABZR87_RS15605 overlap by 8 nucleotidesABZR87_RS15605 and ABZR87_RS15610 are separated by 108 nucleotidesABZR87_RS15610 and ABZR87_RS15615 are separated by 46 nucleotidesABZR87_RS15615 and ABZR87_RS15620 are separated by 131 nucleotides ABZR87_RS15600: ABZR87_RS15600 - RNA polymerase sigma factor RpoD, at 3,288,347 to 3,290,671 _RS15600 ABZR87_RS15605: ABZR87_RS15605 - hypothetical protein, at 3,290,664 to 3,291,044 _RS15605 ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964 _RS15610 ABZR87_RS15615: ABZR87_RS15615 - GatB/YqeY domain-containing protein, at 3,293,011 to 3,293,460 _RS15615 ABZR87_RS15620: ABZR87_RS15620 - NAD(P)/FAD-dependent oxidoreductase, at 3,293,592 to 3,294,815 _RS15620
Group Condition ABZR87_RS15600 ABZR87_RS15605 ABZR87_RS15610 ABZR87_RS15615 ABZR87_RS15620
soil soil EcoFAB sample 1; outgrowth in LB N.D. -4.2 N.D. -0.9 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -3.1 N.D. -0.4 +0.1
root root EcoFAB sample 1; outgrowth in LB N.D. -2.3 N.D. -0.2 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -1.4 N.D. -0.7 -0.2
carbon source Heptanoic (C) N.D. -2.3 N.D. -0.1 +0.2
carbon source Octanoic (C) N.D. -2.2 N.D. +0.1 +0.1
root root EcoFAB sample 2; outgrowth in LB N.D. -1.0 N.D. -1.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.6 N.D. -0.0 -0.3
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -1.1 N.D. -0.6 -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -1.4 N.D. -0.4 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.6 N.D. -0.2 -0.7
root root sample 6; outgrowth in LB N.D. -2.1 N.D. +0.5 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -1.1 N.D. +0.0 -0.3
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.9 N.D. -0.2 -0.2
root root sample 5; outgrowth in LB N.D. -1.7 N.D. +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 N.D. -0.9 +0.3
carbon source butyrate (C) N.D. -0.9 N.D. +0.1 -0.3
soil soil sample 2; outgrowth in LB N.D. -0.8 N.D. -0.4 +0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.1 N.D. +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.3 N.D. -0.1 +0.4
carbon source Lauric (C) N.D. -1.1 N.D. +0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 N.D. -0.7 +0.3
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.8 N.D. +0.6 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 N.D. -0.7 +0.2
phage Ra1_0.1 N.D. +0.7 N.D. -0.2 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 N.D. +0.3 +0.9
carbon source Dodecandioic (C) N.D. +0.7 N.D. +0.5 -0.2
carbon source Protocatechuic Acid (C) N.D. +0.7 N.D. +0.4 +0.2
carbon source Dodecandioic (C) N.D. +1.2 N.D. +0.4 -0.2
carbon source Protocatechuic Acid (C) N.D. +1.0 N.D. +0.4 +0.1
remove
ABZR87_RS15600
plot		 remove
ABZR87_RS15605
plot		 remove
ABZR87_RS15610		 remove
ABZR87_RS15615
plot		 remove
ABZR87_RS15620
plot