Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15500 and ABZR87_RS15505 are separated by 83 nucleotidesABZR87_RS15505 and ABZR87_RS15510 are separated by 150 nucleotidesABZR87_RS15510 and ABZR87_RS15515 overlap by 4 nucleotidesABZR87_RS15515 and ABZR87_RS15520 are separated by 64 nucleotides ABZR87_RS15500: ABZR87_RS15500 - glycosyltransferase, at 3,262,705 to 3,263,772 _RS15500 ABZR87_RS15505: ABZR87_RS15505 - DNA polymerase III subunit alpha, at 3,263,856 to 3,267,374 _RS15505 ABZR87_RS15510: ABZR87_RS15510 - sulfurtransferase, at 3,267,525 to 3,268,373 _RS15510 ABZR87_RS15515: ABZR87_RS15515 - hypothetical protein, at 3,268,370 to 3,268,495 _RS15515 ABZR87_RS15520: ABZR87_RS15520 - flavodoxin family protein, at 3,268,560 to 3,269,132 _RS15520
Group Condition ABZR87_RS15500 ABZR87_RS15505 ABZR87_RS15510 ABZR87_RS15515 ABZR87_RS15520
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 -2.4 -0.3 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -3.0 -0.1 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -2.6 +0.2 N.D. +0.4
soil soil sample 6; outgrowth in LB -2.3 -1.1 -0.1 N.D. +0.1
nitrogen source nitrogen source nitrite 5mM -2.1 -1.1 +0.0 N.D. +0.1
root root sample 6; outgrowth in LB -0.9 -1.4 -0.6 N.D. +0.0
soil soil sample 7; outgrowth in LB -1.3 -1.3 +0.1 N.D. -0.0
soil soil sample 3; outgrowth in LB -0.5 -1.9 +0.0 N.D. +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB +0.4 -2.5 -0.3 N.D. +0.1
carbon source Sebacic (C) +0.3 -1.8 -0.3 N.D. -0.2
soil soil sample 8; outgrowth in LB -1.4 -0.8 +0.3 N.D. +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.9 -2.5 -0.0 N.D. -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +1.4 -3.4 +0.8 N.D. -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB +1.1 -1.5 -0.3 N.D. -0.3
carbon source Trans-2-methyl-2-butenoic (C) +0.9 -1.7 -0.2 N.D. +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 +1.1 -1.0 +0.2 N.D. -0.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.8 -1.2 +0.6 N.D. -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.8 -1.1 +0.8 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 +1.4 -0.3 N.D. -0.0
micoeukaryotes Dictyostellum sp.mixed culture-2 +1.7 -1.3 +0.0 N.D. -0.1
soil soil EcoFAB sample 1; outgrowth in LB +2.5 -0.7 -1.0 N.D. -0.3
micoeukaryotes C.elegans, mixed culture-2 +1.5 -0.9 +0.2 N.D. -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +2.3 -1.8 +0.1 N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 +1.4 -0.2 N.D. +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.7 +0.6 -0.6 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +1.8 +0.1 N.D. +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +2.4 +0.2 -0.3 N.D. -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.8 +1.7 +0.4 N.D. +0.1
soil soil EcoFAB sample 2; outgrowth in LB +3.5 -0.3 +0.2 N.D. +0.1
root root EcoFAB sample 2; outgrowth in LB +4.8 -0.7 +0.0 N.D. +0.2
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