Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15460 and ABZR87_RS15465 are separated by 92 nucleotidesABZR87_RS15465 and ABZR87_RS15470 are separated by 14 nucleotidesABZR87_RS15470 and ABZR87_RS15475 are separated by 50 nucleotidesABZR87_RS15475 and ABZR87_RS15480 are separated by 232 nucleotides ABZR87_RS15460: ABZR87_RS15460 - benzoylformate decarboxylase, at 3,253,815 to 3,255,404 _RS15460 ABZR87_RS15465: ABZR87_RS15465 - LysR family transcriptional regulator, at 3,255,497 to 3,256,396 _RS15465 ABZR87_RS15470: ABZR87_RS15470 - peroxidase-related enzyme, at 3,256,411 to 3,257,007 _RS15470 ABZR87_RS15475: ABZR87_RS15475 - lipid A export permease/ATP-binding protein MsbA, at 3,257,058 to 3,258,782 _RS15475 ABZR87_RS15480: ABZR87_RS15480 - glycosyltransferase family 25 protein, at 3,259,015 to 3,259,797 _RS15480
Group Condition ABZR87_RS15460 ABZR87_RS15465 ABZR87_RS15470 ABZR87_RS15475 ABZR87_RS15480
phage Ra3_1 +0.1 -0.2 +0.2 N.D. -3.0
nitrogen source nitrogen source nitrite 5mM +0.0 +0.1 +0.1 N.D. -2.1
soil soil sample 6; outgrowth in LB +0.3 -0.1 -0.3 N.D. -1.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.4 -0.2 N.D. -1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.6 -0.3 N.D. -0.8
carbon source Octanoic (C) +0.4 -0.2 +0.1 N.D. -1.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 -0.5 N.D. -1.3
carbon source Azelaic (C) -0.7 +0.4 -0.1 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.2 -0.4 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.1 -0.4 N.D. -0.7
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 +0.1 -0.5 N.D. +1.0
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.1 -0.4 N.D. +1.4
soil soil sample 9; outgrowth in LB -0.1 +0.1 -0.5 N.D. +1.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.3 -0.2 N.D. +1.5
carbon source Trans-2-methyl-2-butenoic (C) -0.2 +0.2 -0.2 N.D. +1.1
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.4 +0.0 N.D. +1.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 -0.3 -0.5 N.D. +1.9
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.1 -0.3 +0.2 N.D. +1.4
micoeukaryotes C.elegans, mixed culture-1 +0.1 -0.1 -0.2 N.D. +1.5
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.1 -0.2 +0.1 N.D. +1.6
micoeukaryotes C.elegans, mixed culture-2 +0.2 -0.1 +0.0 N.D. +1.7
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.1 +0.7 N.D. +1.4
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.0 -0.1 +0.2 N.D. +2.3
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 +0.3 -0.3 N.D. +2.3
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -0.0 -0.6 N.D. +2.9
carbon source Lauric (C) -0.1 -0.1 +0.2 N.D. +2.4
soil soil EcoFAB sample 2; outgrowth in LB +0.2 +0.1 -0.1 N.D. +3.4
root root EcoFAB sample 2; outgrowth in LB +0.1 -0.0 -0.3 N.D. +4.6
carbon source Protocatechuic Acid (C) +6.5 +0.8 +0.2 N.D. -0.7
carbon source Protocatechuic Acid (C) +7.4 +0.8 +0.2 N.D. -0.8
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