Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15395 and ABZR87_RS15400 are separated by 71 nucleotidesABZR87_RS15400 and ABZR87_RS15405 are separated by 171 nucleotidesABZR87_RS15405 and ABZR87_RS15410 are separated by 94 nucleotidesABZR87_RS15410 and ABZR87_RS15415 are separated by 156 nucleotides ABZR87_RS15395: ABZR87_RS15395 - uracil phosphoribosyltransferase, at 3,240,074 to 3,240,724 _RS15395 ABZR87_RS15400: ABZR87_RS15400 - helicase HerA-like C-terminal domain-containing protein, at 3,240,796 to 3,242,361 _RS15400 ABZR87_RS15405: ABZR87_RS15405 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,242,533 to 3,243,258 _RS15405 ABZR87_RS15410: ABZR87_RS15410 - phosphoribosylamine--glycine ligase, at 3,243,353 to 3,244,621 _RS15410 ABZR87_RS15415: ABZR87_RS15415 - oxygen-dependent coproporphyrinogen oxidase, at 3,244,778 to 3,245,686 _RS15415
Group Condition ABZR87_RS15395 ABZR87_RS15400 ABZR87_RS15405 ABZR87_RS15410 ABZR87_RS15415
carbon source 4-Hydroxybenzoic Acid (C) -2.3 +0.5 -2.8 N.D. N.D.
carbon source Sebacic (C) +0.2 -0.0 -3.8 N.D. N.D.
carbon source Azelaic (C) +0.1 -0.0 -3.2 N.D. N.D.
carbon source Heptanoic (C) +0.2 +0.0 -3.0 N.D. N.D.
carbon source Valeric (C) -1.4 -0.1 -1.0 N.D. N.D.
carbon source Protocatechuic Acid (C) -0.7 -0.3 -1.3 N.D. N.D.
carbon source succinate (C) -0.2 -0.0 -1.9 N.D. N.D.
carbon source Lauric (C) -0.2 +0.1 -2.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.0 -2.1 N.D. N.D.
carbon source Sebacic (C) -0.0 +0.1 -2.2 N.D. N.D.
carbon source Octanoic (C) -0.6 +0.3 -1.8 N.D. N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.0 -2.5 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.1 -1.7 N.D. N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 -0.2 -1.3 N.D. N.D.
root root sample 4; outgrowth in LB -0.5 -0.3 -0.9 N.D. N.D.
carbon source succinate (C) -0.1 +0.0 -1.6 N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB -0.5 -0.4 -0.7 N.D. N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 +0.1 -1.3 N.D. N.D.
carbon source Octanoic (C) +0.2 +0.2 -1.5 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.3 -1.3 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.5 -0.1 -1.4 N.D. N.D.
carbon source 1,2-Propanediol (C) +0.3 +0.1 -1.3 N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.4 +0.1 -1.3 N.D. N.D.
carbon source L-Glutamic (C) +0.5 -0.3 -0.9 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 -0.0 -1.2 N.D. N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.7 -0.0 -1.2 N.D. N.D.
root root sample 5; outgrowth in LB +0.8 +0.0 -1.1 N.D. N.D.
carbon source Beta-alanine (C) +0.6 +0.1 -1.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.5 +0.5 -1.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 +1.4 N.D. N.D.
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