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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS15335 and ABZR87_RS15340 are separated by 275 nucleotides
ABZR87_RS15340 and ABZR87_RS15345 are separated by 482 nucleotides
ABZR87_RS15345 and ABZR87_RS15350 overlap by 8 nucleotides
ABZR87_RS15350 and ABZR87_RS15355 are separated by 1 nucleotides
ABZR87_RS15335: ABZR87_RS15335 - 5-oxoprolinase subunit PxpB, at 3,227,292 to 3,227,939
_RS15335
ABZR87_RS15340: ABZR87_RS15340 - multidrug effflux MFS transporter, at 3,228,215 to 3,229,429
_RS15340
ABZR87_RS15345: ABZR87_RS15345 - ABC transporter ATP-binding protein, at 3,229,912 to 3,231,426
_RS15345
ABZR87_RS15350: ABZR87_RS15350 - ABC transporter permease, at 3,231,419 to 3,232,528
_RS15350
ABZR87_RS15355: ABZR87_RS15355 - ABC transporter permease, at 3,232,530 to 3,233,450
_RS15355
Group
Condition
ABZR87
_RS15335
ABZR87
_RS15340
ABZR87
_RS15345
ABZR87
_RS15350
ABZR87
_RS15355
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
-0.2
+0.0
-0.3
-0.5
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.3
+0.2
-0.1
+0.1
-0.6
rhizosphere
rhizosphere sample 9; outgrowth in LB
-0.3
-0.1
-0.1
+0.3
-0.3
rhizosphere
rhizosphere sample 2; outgrowth in LB
-0.7
-0.1
+0.3
+0.1
+0.3
nitrogen source
nitrogen source nitrite 0.5mM
-0.5
+0.0
-0.0
+0.1
+0.4
rhizosphere
rhizosphere EcoFAB sample 2; outgrowth in LB
-0.0
-0.2
-0.2
+0.2
+0.4
root
root EcoFAB sample 2; outgrowth in LB
-0.0
-0.3
+0.2
-0.1
+0.5
no_plant_rhizosphere
no_plant_rhizosphere sample 3; outgrowth in LB
-0.1
+0.3
-0.4
+0.2
+0.3
root
root sample 5; outgrowth in LB
+0.5
+0.0
+0.4
-0.3
-0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.1
+0.1
-0.2
+0.4
+0.4
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.5
+0.2
+0.2
-0.1
-0.1
carbon source
butyrate (C)
+0.5
+0.1
+0.0
-0.1
+0.3
soil
soil EcoFAB sample 1; outgrowth in LB
+0.7
+0.2
+0.1
-0.1
+0.0
carbon source
Protocatechuic Acid (C)
+0.9
+0.1
+0.2
+0.1
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
+1.1
+0.2
+0.1
-0.1
+0.3
carbon source
D-Glucose (C)
+1.4
+0.0
+0.1
+0.1
-0.0
carbon source
Protocatechuic Acid (C)
+1.7
-0.0
-0.1
+0.2
-0.1
carbon source
D-Glucose (C)
+1.5
+0.2
+0.1
+0.0
-0.0
carbon source
propionate (C)
+1.5
+0.1
+0.2
+0.0
+0.2
carbon source
propionate (C)
+1.6
+0.1
+0.3
+0.1
+0.1
carbon source
Sebacic (C)
+2.2
+0.0
+0.4
+0.0
+0.1
carbon source
Azelaic (C)
+3.6
-0.0
-0.3
+0.0
+0.5
carbon source
Heptanoic (C)
+3.4
+0.2
-0.1
+0.3
+0.0
carbon source
Heptanoic (C)
+3.3
+0.1
-0.0
+0.2
+0.3
carbon source
Lauric (C)
+2.9
+0.3
+0.2
+0.2
+0.2
carbon source
Octanoic (C)
+4.5
+0.4
-0.2
-0.3
-0.0
carbon source
Dodecandioic (C)
+4.4
+0.2
-0.1
+0.1
-0.1
carbon source
Sebacic (C)
+4.4
-0.0
-0.1
+0.1
+0.2
carbon source
Dodecandioic (C)
+4.1
+0.2
+0.2
+0.2
+0.2
carbon source
Octanoic (C)
+4.6
+0.2
+0.5
+0.2
+0.1
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