Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15335 and ABZR87_RS15340 are separated by 275 nucleotidesABZR87_RS15340 and ABZR87_RS15345 are separated by 482 nucleotidesABZR87_RS15345 and ABZR87_RS15350 overlap by 8 nucleotidesABZR87_RS15350 and ABZR87_RS15355 are separated by 1 nucleotides ABZR87_RS15335: ABZR87_RS15335 - 5-oxoprolinase subunit PxpB, at 3,227,292 to 3,227,939 _RS15335 ABZR87_RS15340: ABZR87_RS15340 - multidrug effflux MFS transporter, at 3,228,215 to 3,229,429 _RS15340 ABZR87_RS15345: ABZR87_RS15345 - ABC transporter ATP-binding protein, at 3,229,912 to 3,231,426 _RS15345 ABZR87_RS15350: ABZR87_RS15350 - ABC transporter permease, at 3,231,419 to 3,232,528 _RS15350 ABZR87_RS15355: ABZR87_RS15355 - ABC transporter permease, at 3,232,530 to 3,233,450 _RS15355
Group Condition ABZR87_RS15335 ABZR87_RS15340 ABZR87_RS15345 ABZR87_RS15350 ABZR87_RS15355
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.2 +0.0 -0.3 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.2 -0.1 +0.1 -0.6
rhizosphere rhizosphere sample 9; outgrowth in LB -0.3 -0.1 -0.1 +0.3 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 -0.1 +0.3 +0.1 +0.3
nitrogen source nitrogen source nitrite 0.5mM -0.5 +0.0 -0.0 +0.1 +0.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.0 -0.2 -0.2 +0.2 +0.4
root root EcoFAB sample 2; outgrowth in LB -0.0 -0.3 +0.2 -0.1 +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 +0.3 -0.4 +0.2 +0.3
root root sample 5; outgrowth in LB +0.5 +0.0 +0.4 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.1 -0.2 +0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 +0.2 -0.1 -0.1
carbon source butyrate (C) +0.5 +0.1 +0.0 -0.1 +0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.7 +0.2 +0.1 -0.1 +0.0
carbon source Protocatechuic Acid (C) +0.9 +0.1 +0.2 +0.1 +0.0
carbon source 4-Hydroxybenzoic Acid (C) +1.1 +0.2 +0.1 -0.1 +0.3
carbon source D-Glucose (C) +1.4 +0.0 +0.1 +0.1 -0.0
carbon source Protocatechuic Acid (C) +1.7 -0.0 -0.1 +0.2 -0.1
carbon source D-Glucose (C) +1.5 +0.2 +0.1 +0.0 -0.0
carbon source propionate (C) +1.5 +0.1 +0.2 +0.0 +0.2
carbon source propionate (C) +1.6 +0.1 +0.3 +0.1 +0.1
carbon source Sebacic (C) +2.2 +0.0 +0.4 +0.0 +0.1
carbon source Azelaic (C) +3.6 -0.0 -0.3 +0.0 +0.5
carbon source Heptanoic (C) +3.4 +0.2 -0.1 +0.3 +0.0
carbon source Heptanoic (C) +3.3 +0.1 -0.0 +0.2 +0.3
carbon source Lauric (C) +2.9 +0.3 +0.2 +0.2 +0.2
carbon source Octanoic (C) +4.5 +0.4 -0.2 -0.3 -0.0
carbon source Dodecandioic (C) +4.4 +0.2 -0.1 +0.1 -0.1
carbon source Sebacic (C) +4.4 -0.0 -0.1 +0.1 +0.2
carbon source Dodecandioic (C) +4.1 +0.2 +0.2 +0.2 +0.2
carbon source Octanoic (C) +4.6 +0.2 +0.5 +0.2 +0.1
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