Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15315 and ABZR87_RS15320 are separated by 3 nucleotidesABZR87_RS15320 and ABZR87_RS15325 are separated by 55 nucleotidesABZR87_RS15325 and ABZR87_RS15330 are separated by 19 nucleotidesABZR87_RS15330 and ABZR87_RS15335 overlap by 4 nucleotides ABZR87_RS15315: ABZR87_RS15315 - DUF979 domain-containing protein, at 3,223,730 to 3,224,686 _RS15315 ABZR87_RS15320: ABZR87_RS15320 - DUF969 domain-containing protein, at 3,224,690 to 3,225,427 _RS15320 ABZR87_RS15325: ABZR87_RS15325 - 5-oxoprolinase subunit PxpA, at 3,225,483 to 3,226,226 _RS15325 ABZR87_RS15330: ABZR87_RS15330 - biotin-dependent carboxyltransferase family protein, at 3,226,246 to 3,227,295 _RS15330 ABZR87_RS15335: ABZR87_RS15335 - 5-oxoprolinase subunit PxpB, at 3,227,292 to 3,227,939 _RS15335
Group Condition ABZR87_RS15315 ABZR87_RS15320 ABZR87_RS15325 ABZR87_RS15330 ABZR87_RS15335
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 -1.3 -0.8 -0.5 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -2.2 -0.2 -0.2 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.1 -1.9 +0.0 -0.7
nitrogen source nitrogen source nitrite 0.5mM +0.2 -1.3 +0.2 -0.7 -0.5
root root sample 5; outgrowth in LB -0.4 -0.9 -1.1 +0.1 +0.5
soil soil EcoFAB sample 1; outgrowth in LB +0.7 -1.6 -0.2 +0.5 +0.7
root root EcoFAB sample 1; outgrowth in LB +0.8 +0.8 -0.5 +0.7 -0.0
carbon source adipate (C) +0.5 +0.5 +0.8 +0.5 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +1.3 +0.7 +0.5 -0.1
carbon source succinate (C) +0.6 +0.6 +0.8 +0.7 +0.6
carbon source butyrate (C) +0.5 +0.5 +0.9 +0.7 +0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +1.2 +1.5 +0.1 +0.4 +0.1
carbon source butyrate (C) +0.7 +0.8 +0.4 +0.9 +0.5
carbon source 4-Hydroxybenzoic Acid (C) +1.1 +1.0 +1.2 +1.3 +1.1
carbon source Protocatechuic Acid (C) +1.3 +1.8 +1.6 +1.5 +0.9
carbon source D-Glucose (C) +1.6 +1.5 +1.6 +1.5 +1.4
carbon source D-Glucose (C) +1.6 +1.7 +1.7 +1.4 +1.5
carbon source propionate (C) +1.5 +1.7 +1.8 +1.4 +1.5
carbon source propionate (C) +1.6 +1.7 +1.6 +1.5 +1.6
carbon source Protocatechuic Acid (C) +1.7 +2.3 +1.3 +1.5 +1.7
carbon source Sebacic (C) +2.1 +2.2 +2.3 +2.3 +2.2
carbon source Lauric (C) +3.1 +3.2 +3.1 +3.0 +2.9
carbon source Azelaic (C) +3.8 +3.6 +3.7 +3.4 +3.6
carbon source Heptanoic (C) +3.5 +3.6 +4.9 +3.2 +3.3
carbon source Heptanoic (C) +3.5 +3.7 +4.9 +3.3 +3.4
carbon source Dodecandioic (C) +4.2 +4.3 +4.0 +4.2 +4.1
carbon source Dodecandioic (C) +4.2 +4.8 +3.7 +3.9 +4.4
carbon source Sebacic (C) +4.3 +4.9 +3.9 +4.1 +4.4
carbon source Octanoic (C) +5.1 +5.2 +5.7 +4.5 +4.5
carbon source Octanoic (C) +5.2 +5.2 +5.9 +4.5 +4.6
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ABZR87_RS15315
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ABZR87_RS15320
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ABZR87_RS15330
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