Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15240 and ABZR87_RS15245 are separated by 150 nucleotidesABZR87_RS15245 and ABZR87_RS15250 are separated by 105 nucleotidesABZR87_RS15250 and ABZR87_RS15255 are separated by 114 nucleotidesABZR87_RS15255 and ABZR87_RS15260 are separated by 11 nucleotides ABZR87_RS15240: ABZR87_RS15240 - YicC/YloC family endoribonuclease, at 3,211,637 to 3,212,572 _RS15240 ABZR87_RS15245: ABZR87_RS15245 - serine/threonine-protein kinase, at 3,212,723 to 3,213,748 _RS15245 ABZR87_RS15250: ABZR87_RS15250 - PP2C family serine/threonine-protein phosphatase, at 3,213,854 to 3,214,768 _RS15250 ABZR87_RS15255: ABZR87_RS15255 - ribonuclease PH, at 3,214,883 to 3,215,599 _RS15255 ABZR87_RS15260: ABZR87_RS15260 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 3,215,611 to 3,216,216 _RS15260
Group Condition ABZR87_RS15240 ABZR87_RS15245 ABZR87_RS15250 ABZR87_RS15255 ABZR87_RS15260
carbon source Sebacic (C) -0.7 +0.0 -0.7 -4.6 +0.1
phage Ra1_0.01 -0.4 +1.9 -5.4 +0.0 -0.1
phage Ra3_0.1 -0.2 +2.2 -6.6 +0.4 +0.1
phage Ra3_0.01 +0.1 +0.5 -4.5 -0.2 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.7 +0.3 +1.3 -3.7 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.0 +0.7 -2.2 -0.1
carbon source Heptanoic (C) +1.0 -0.2 +0.7 -2.9 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 +1.1 -2.1 +0.1
phage Ra1_0.1 +0.1 +5.5 -5.7 -0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 -0.9 +2.5 -0.3 -0.0
rhizosphere rhizosphere sample 3; outgrowth in LB -2.2 +0.4 +1.9 -0.1 -0.1
phage Ra3_1 +0.2 +5.6 -5.7 -0.3 +0.3
carbon source Heptanoic (C) +1.2 -0.1 +0.6 -1.7 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.6 +2.1 -0.6 +0.0
root root sample 4; outgrowth in LB -1.4 +0.0 +2.2 -0.5 -0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +1.2 +0.8 -1.7 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.4 +2.6 -1.1 -0.1
root root EcoFAB sample 2; outgrowth in LB -1.6 +0.3 +2.6 -0.6 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.4 +2.2 -0.6 +0.1
root root sample 6; outgrowth in LB -0.4 -0.4 +2.4 -0.4 -0.2
root root sample 5; outgrowth in LB +0.7 -0.9 +2.1 -0.8 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.5 +2.6 -0.8 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.6 +2.0 -0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 -0.3 +2.2 -0.7 -0.1
root root EcoFAB sample 1; outgrowth in LB +1.0 +0.3 +2.3 -1.1 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.4 +0.5 +2.6 +0.0 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 -0.3 +2.7 -0.7 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.8 +2.8 -0.4 -1.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.5 +2.0 +1.2 -0.5 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +1.9 +3.5 -0.7 -0.8 -0.0
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