Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS15205 and ABZR87_RS15210 are separated by 156 nucleotidesABZR87_RS15210 and ABZR87_RS15215 are separated by 9 nucleotidesABZR87_RS15215 and ABZR87_RS15220 are separated by 115 nucleotidesABZR87_RS15220 and ABZR87_RS15225 are separated by 172 nucleotides ABZR87_RS15205: ABZR87_RS15205 - transcriptional regulator GcvA, at 3,205,079 to 3,205,996 _RS15205 ABZR87_RS15210: ABZR87_RS15210 - DMT family transporter, at 3,206,153 to 3,206,986 _RS15210 ABZR87_RS15215: ABZR87_RS15215 - transcription elongation factor GreB, at 3,206,996 to 3,207,559 _RS15215 ABZR87_RS15220: ABZR87_RS15220 - tRNA-Arg, at 3,207,675 to 3,207,751 _RS15220 ABZR87_RS15225: ABZR87_RS15225 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,207,924 to 3,210,344 _RS15225
Group Condition ABZR87_RS15205 ABZR87_RS15210 ABZR87_RS15215 ABZR87_RS15220 ABZR87_RS15225
carbon source Octanoic (C) -0.4 -0.7 -0.1 N.D. -2.3
soil soil sample 4; outgrowth in LB -0.2 -0.3 -0.3 N.D. -1.5
carbon source Octanoic (C) -0.0 -0.1 +0.2 N.D. -2.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 +0.1 N.D. -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.4 -0.1 N.D. -0.7
rhizosphere rhizosphere sample 8; outgrowth in LB -0.4 +0.2 -0.3 N.D. -1.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.3 -0.6 N.D. -1.2
soil soil EcoFAB sample 2; outgrowth in LB -0.1 +0.0 -0.3 N.D. -1.1
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.0 -0.2 N.D. -1.5
carbon source Protocatechuic Acid (C) -0.1 -0.2 -0.2 N.D. -0.9
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 -0.1 -0.0 N.D. -1.0
soil soil sample 9; outgrowth in LB -0.0 +0.0 +0.1 N.D. -1.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 +0.0 -0.4 N.D. -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.2 -0.0 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.1 -0.1 N.D. -0.9
carbon source Lauric (C) -0.0 +0.1 -0.1 N.D. -0.9
carbon source 3-Hydroxypropionate (C) -0.0 -0.2 +0.2 N.D. -0.9
carbon source D-Galactose (C) +0.1 -0.2 +0.1 N.D. -0.8
soil soil sample 3; outgrowth in LB -0.2 +0.2 +0.1 N.D. -1.0
soil soil EcoFAB sample 1; outgrowth in LB -0.4 +0.2 -0.0 N.D. -0.6
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 -0.1 -0.1 N.D. -0.9
rhizosphere rhizosphere sample 4; outgrowth in LB -0.0 -0.1 +0.4 N.D. -1.1
soil soil sample 8; outgrowth in LB -0.0 -0.0 +0.4 N.D. -0.8
root root sample 5; outgrowth in LB +0.0 -0.3 +0.8 N.D. -0.9
root root EcoFAB sample 1; outgrowth in LB +0.2 +0.3 +0.2 N.D. -0.9
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +0.1 -0.2 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.0 +0.7 N.D. -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.4 -0.0 +0.6 N.D. -0.3
carbon source Glycerol (C) +0.2 -0.2 +0.3 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.6 -0.2 N.D. -0.4
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