Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14900 and ABZR87_RS14905 are separated by 38 nucleotidesABZR87_RS14905 and ABZR87_RS14910 are separated by 102 nucleotidesABZR87_RS14910 and ABZR87_RS14915 are separated by 318 nucleotidesABZR87_RS14915 and ABZR87_RS14920 are separated by 159 nucleotides ABZR87_RS14900: ABZR87_RS14900 - NAD(P)H-quinone oxidoreductase, at 3,142,388 to 3,143,392 _RS14900 ABZR87_RS14905: ABZR87_RS14905 - HAD family hydrolase, at 3,143,431 to 3,144,384 _RS14905 ABZR87_RS14910: ABZR87_RS14910 - polyribonucleotide nucleotidyltransferase, at 3,144,487 to 3,146,661 _RS14910 ABZR87_RS14915: ABZR87_RS14915 - 30S ribosomal protein S15, at 3,146,980 to 3,147,249 _RS14915 ABZR87_RS14920: ABZR87_RS14920 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,147,409 to 3,148,665 _RS14920
Group Condition ABZR87_RS14900 ABZR87_RS14905 ABZR87_RS14910 ABZR87_RS14915 ABZR87_RS14920
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.8 -3.8 N.D. +0.2
carbon source Octanoic (C) -0.2 -0.1 -2.7 N.D. -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.1 -2.1 N.D. -0.1
carbon source Octanoic (C) -0.1 -0.6 -1.4 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 -2.1 N.D. +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 -1.7 N.D. -0.0
micoeukaryotes C.elegans, mixed culture-2 -0.2 +0.2 -1.6 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 -1.5 N.D. +0.0
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 +0.0 -1.2 N.D. -0.3
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 +0.2 -1.2 N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.2 -1.5 N.D. +0.1
carbon source Sebacic (C) -0.1 -1.7 +1.0 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.2 -1.0 N.D. +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 -1.0 N.D. +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 +0.1 +1.3 N.D. -0.1
carbon source Azelaic (C) -0.3 +0.1 +1.1 N.D. +0.4
carbon source Dodecandioic (C) -0.2 -0.2 +1.4 N.D. +0.3
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.2 +1.2 N.D. -0.1
soil soil sample 9; outgrowth in LB +0.1 -0.1 +1.7 N.D. -0.1
phage Ra3_1 +0.1 +0.2 +1.0 N.D. +0.4
carbon source Dodecandioic (C) +0.1 -0.3 +1.7 N.D. +0.2
phage Ra1_0.1 +0.0 +0.3 +1.4 N.D. +0.0
root root sample 5; outgrowth in LB -0.5 +0.1 +2.1 N.D. +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB -0.0 +0.2 +2.5 N.D. -0.4
rhizosphere rhizosphere sample 7; outgrowth in LB +0.0 +0.0 +2.1 N.D. +0.1
root root sample 6; outgrowth in LB +0.0 +0.7 +1.6 N.D. -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB +0.2 -0.0 +2.2 N.D. -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +0.0 +0.4 +2.1 N.D. +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.0 +0.3 +2.3 N.D. +0.3
root root sample 4; outgrowth in LB +0.1 +0.1 +2.7 N.D. +0.1
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