Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14740 and ABZR87_RS14745 are separated by 48 nucleotidesABZR87_RS14745 and ABZR87_RS14750 are separated by 79 nucleotidesABZR87_RS14750 and ABZR87_RS14755 are separated by 102 nucleotidesABZR87_RS14755 and ABZR87_RS14760 are separated by 141 nucleotides ABZR87_RS14740: ABZR87_RS14740 - HupE/UreJ family protein, at 3,112,718 to 3,113,335 _RS14740 ABZR87_RS14745: ABZR87_RS14745 - urease subunit gamma, at 3,113,384 to 3,113,686 _RS14745 ABZR87_RS14750: ABZR87_RS14750 - urease accessory protein UreD, at 3,113,766 to 3,114,653 _RS14750 ABZR87_RS14755: ABZR87_RS14755 - urea ABC transporter ATP-binding subunit UrtE, at 3,114,756 to 3,115,448 _RS14755 ABZR87_RS14760: ABZR87_RS14760 - urea ABC transporter ATP-binding protein UrtD, at 3,115,590 to 3,116,441 _RS14760
Group Condition ABZR87_RS14740 ABZR87_RS14745 ABZR87_RS14750 ABZR87_RS14755 ABZR87_RS14760
carbon source Sebacic (C) N.D. -5.2 -0.1 -0.7 +0.2
phage Ra1_0.1 N.D. -2.2 -0.6 +0.1 +0.4
carbon source Trans-2-methyl-2-butenoic (C) N.D. -1.6 -0.3 -0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.2 +0.0 -0.1 -0.8
nitrogen source nitrogen source nitrite 1mM N.D. -0.9 -0.6 -0.1 -0.3
carbon source Disodium Glutarate (C) N.D. -1.0 -0.0 -0.5 -0.3
carbon source Azelaic (C) N.D. +0.1 -0.8 -0.4 -0.6
carbon source Octanoic (C) N.D. -2.1 -0.1 +0.3 +0.4
carbon source D-Glucose (C) N.D. -1.0 -0.3 +0.2 -0.2
nitrogen source nitrogen source nitrite 0.5mM N.D. -1.2 -0.6 -0.2 +0.8
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -0.7 -0.3 -0.8 +0.7
carbon source Hexanoic (C) N.D. -1.0 -0.5 +0.3 +0.1
root root sample 6; outgrowth in LB N.D. -0.9 +0.2 +0.0 -0.4
nitrogen source nitrogen source nitrate 5mM N.D. -1.5 +0.3 +0.0 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.2 -0.2 +0.4 +0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 -0.2 +0.9 -0.8
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.5 +0.6 -0.0 -0.9
carbon source D-Glucose (C) N.D. -0.8 -0.2 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.9 +0.1 +1.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.9 -0.1 +0.8 +0.1
nitrogen source nitrogen source nitrate 20mM N.D. -1.0 +0.6 +0.1 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.7 +1.4 -0.2 -0.5
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.7 +0.7 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 -0.6 +0.4 -0.2
soil soil EcoFAB sample 1; outgrowth in LB N.D. +1.1 -1.1 +0.1 +0.3
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.8 +0.4 +0.2 +0.7
root root EcoFAB sample 2; outgrowth in LB N.D. -0.7 +0.2 -0.8 +2.0
root root sample 4; outgrowth in LB N.D. +0.7 +0.6 +0.2 +0.3
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.8 +0.3 +0.7 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +2.5 +0.6 +0.4 -0.0
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