Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14645 and ABZR87_RS14650 are separated by 20 nucleotidesABZR87_RS14650 and ABZR87_RS14655 are separated by 46 nucleotidesABZR87_RS14655 and ABZR87_RS14660 are separated by 42 nucleotidesABZR87_RS14660 and ABZR87_RS14665 are separated by 12 nucleotides ABZR87_RS14645: ABZR87_RS14645 - pyridoxal phosphate-dependent aminotransferase, at 3,093,771 to 3,094,943 _RS14645 ABZR87_RS14650: ABZR87_RS14650 - glutathione S-transferase, at 3,094,964 to 3,095,617 _RS14650 ABZR87_RS14655: ABZR87_RS14655 - 3-hydroxyacyl-CoA dehydrogenase, at 3,095,664 to 3,097,235 _RS14655 ABZR87_RS14660: ABZR87_RS14660 - oxepin-CoA hydrolase, alternative type, at 3,097,278 to 3,098,057 _RS14660 ABZR87_RS14665: ABZR87_RS14665 - histidine phosphatase family protein, at 3,098,070 to 3,098,804 _RS14665
Group Condition ABZR87_RS14645 ABZR87_RS14650 ABZR87_RS14655 ABZR87_RS14660 ABZR87_RS14665
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.2 -0.1 -0.2 -4.4
carbon source adipate (C) +0.1 +0.3 -3.3 -0.0 -1.2
carbon source Sebacic (C) +0.0 +0.1 -2.3 +0.0 -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +0.4 +0.3 -4.6
carbon source Dodecandioic (C) +0.0 +0.1 -3.2 +0.2 -0.3
carbon source Dodecandioic (C) -0.0 -0.2 -2.8 -0.0 -0.1
carbon source adipate (C) +0.2 +0.5 -3.2 +0.0 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 +0.3 +0.0 -2.4
carbon source Disodium Glutarate (C) -0.2 -0.1 +0.0 +0.1 -2.3
carbon source Sebacic (C) +0.2 +0.3 -2.7 -0.6 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 -0.3 -0.5 -2.0
carbon source acetate (C) +0.1 +0.2 -0.1 -0.1 -2.5
carbon source Protocatechuic Acid (C) -0.0 +0.3 -0.1 -0.1 -2.2
carbon source Suberic (C) +0.1 +0.3 -1.7 -0.1 -0.6
root root EcoFAB sample 2; outgrowth in LB -0.2 -0.4 -0.2 -0.2 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 +0.7 -0.2 -1.9
soil soil sample 4; outgrowth in LB -0.1 -0.2 +0.1 +0.1 -1.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -0.5 +0.3 -0.4 -0.6
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +0.0 -0.4 -0.2 -1.0
carbon source butyrate (C) -0.1 +0.0 +0.1 +0.3 -1.4
carbon source succinate (C) +0.0 -0.1 +0.2 +0.2 -1.4
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.2 +0.1 +0.3 -1.8
root root sample 6; outgrowth in LB -0.3 +0.4 -0.1 +0.6 -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.8 -0.2 +0.1 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 +0.2 +0.9 -1.2
carbon source Azelaic (C) +0.2 +0.3 -0.3 +0.4 -0.7
nitrogen source nitrogen source nitrate 5mM -0.1 +0.1 +0.3 -0.2 +1.1
nitrogen source nitrogen source Ammonium chloride 20mM -0.0 -0.1 +0.3 +0.1 +1.3
nitrogen source nitrogen source nitrite 1mM -0.0 -0.0 +0.2 +0.2 +1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 +0.1 +0.3 +3.7
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