Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14595 and ABZR87_RS14600 are separated by 35 nucleotidesABZR87_RS14600 and ABZR87_RS14605 are separated by 76 nucleotidesABZR87_RS14605 and ABZR87_RS14610 are separated by 216 nucleotidesABZR87_RS14610 and ABZR87_RS14615 are separated by 97 nucleotides ABZR87_RS14595: ABZR87_RS14595 - hypothetical protein, at 3,082,907 to 3,083,455 _RS14595 ABZR87_RS14600: ABZR87_RS14600 - 2-methylcitrate dehydratase, at 3,083,491 to 3,083,889 _RS14600 ABZR87_RS14605: ABZR87_RS14605 - aconitate hydratase AcnA, at 3,083,966 to 3,086,671 _RS14605 ABZR87_RS14610: ABZR87_RS14610 - hypothetical protein, at 3,086,888 to 3,087,169 _RS14610 ABZR87_RS14615: ABZR87_RS14615 - DUF2863 family protein, at 3,087,267 to 3,088,478 _RS14615
Group Condition ABZR87_RS14595 ABZR87_RS14600 ABZR87_RS14605 ABZR87_RS14610 ABZR87_RS14615
soil soil EcoFAB sample 2; outgrowth in LB -0.5 N.D. -3.7 -0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. -3.0 -0.7 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 N.D. -2.9 -0.4 -0.0
root root EcoFAB sample 2; outgrowth in LB -0.7 N.D. -2.6 -0.4 -0.3
soil soil sample 8; outgrowth in LB +0.0 N.D. -3.5 -0.3 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 N.D. -2.4 +0.4 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 N.D. -2.2 -0.1 -0.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.6 N.D. -2.9 +0.2 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.2 N.D. -3.6 +1.0 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. -2.5 +0.1 -0.1
soil soil sample 4; outgrowth in LB -0.3 N.D. -2.8 +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. -2.2 -0.2 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 N.D. -3.6 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. -2.5 -0.0 +0.4
root root sample 5; outgrowth in LB -1.3 N.D. -0.8 -0.1 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.2 N.D. -0.9 -0.0 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.4 N.D. -1.4 +0.0 -0.9
soil soil sample 7; outgrowth in LB -0.5 N.D. -2.3 +0.2 -0.0
rhizosphere rhizosphere sample 7; outgrowth in LB -0.5 N.D. -1.1 -0.3 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 N.D. -1.7 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 N.D. -1.8 -0.0 -0.3
soil soil sample 3; outgrowth in LB -0.3 N.D. -2.7 +0.4 +0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.5 N.D. -1.8 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. -1.3 -0.3 -0.9
rhizosphere rhizosphere sample 4; outgrowth in LB -0.7 N.D. -1.2 +0.2 -0.6
root root sample 6; outgrowth in LB -1.6 N.D. -0.2 +0.3 -0.7
root root EcoFAB sample 1; outgrowth in LB +0.2 N.D. -2.5 +0.3 +0.1
carbon source Octanoic (C) +0.8 N.D. -0.1 -1.1 -0.6
carbon source Sebacic (C) +0.6 N.D. -0.0 +0.4 -1.7
carbon source Octanoic (C) +1.2 N.D. -0.6 -0.5 -0.6
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ABZR87_RS14595
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ABZR87_RS14600
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ABZR87_RS14610
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ABZR87_RS14615
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