Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14580 and ABZR87_RS14585 are separated by 117 nucleotidesABZR87_RS14585 and ABZR87_RS14590 are separated by 23 nucleotidesABZR87_RS14590 and ABZR87_RS14595 are separated by 262 nucleotidesABZR87_RS14595 and ABZR87_RS14600 are separated by 35 nucleotides ABZR87_RS14580: ABZR87_RS14580 - malate dehydrogenase, at 3,079,640 to 3,080,626 _RS14580 ABZR87_RS14585: ABZR87_RS14585 - CoA ester lyase, at 3,080,744 to 3,081,724 _RS14585 ABZR87_RS14590: ABZR87_RS14590 - methylisocitrate lyase, at 3,081,748 to 3,082,644 _RS14590 ABZR87_RS14595: ABZR87_RS14595 - hypothetical protein, at 3,082,907 to 3,083,455 _RS14595 ABZR87_RS14600: ABZR87_RS14600 - 2-methylcitrate dehydratase, at 3,083,491 to 3,083,889 _RS14600
Group Condition ABZR87_RS14580 ABZR87_RS14585 ABZR87_RS14590 ABZR87_RS14595 ABZR87_RS14600
root root sample 5; outgrowth in LB N.D. +0.7 -1.0 -1.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.3 -0.2 -1.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.6 -0.5 -0.4 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.5 -0.4 -0.5 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.3 -0.2 -0.9 N.D.
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. -0.3 -0.1 -0.9 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. -0.4 -0.4 -0.6 N.D.
carbon source Heptanoic (C) N.D. -0.7 -0.0 -0.3 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 -0.0 -1.1 N.D.
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.0 -0.4 -0.5 N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. +0.1 -0.2 -0.7 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.1 -0.4 -0.5 N.D.
root root sample 6; outgrowth in LB N.D. +1.1 -0.1 -1.6 N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. +0.3 +0.1 -1.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.6 +0.2 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.4 +0.3 -0.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.6 -0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 -0.0 -0.7 N.D.
phage Ra1_0.1 N.D. +0.1 +0.3 -0.8 N.D.
nitrogen source nitrogen source nitrate 5mM N.D. -0.4 -0.2 +0.4 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. +0.3 +0.2 -0.6 N.D.
carbon source Azelaic (C) N.D. -0.7 +0.0 +0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.9 -0.2 -0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 +0.3 -0.6 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. +0.3 +0.4 -0.5 N.D.
carbon source Octanoic (C) N.D. +0.0 -0.8 +1.2 N.D.
carbon source Octanoic (C) N.D. -0.4 +0.1 +0.8 N.D.
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.4 +0.2 +0.7 N.D.
carbon source Sebacic (C) N.D. +0.2 -0.3 +0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 +0.1 +0.1 N.D.
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