Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14405 and ABZR87_RS14410 are separated by 9 nucleotidesABZR87_RS14410 and ABZR87_RS14415 are separated by 244 nucleotidesABZR87_RS14415 and ABZR87_RS14420 are separated by 188 nucleotidesABZR87_RS14420 and ABZR87_RS14425 are separated by 307 nucleotides ABZR87_RS14405: ABZR87_RS14405 - MotA/TolQ/ExbB proton channel family protein, at 3,047,478 to 3,048,206 _RS14405 ABZR87_RS14410: ABZR87_RS14410 - biopolymer transporter ExbD, at 3,048,216 to 3,048,626 _RS14410 ABZR87_RS14415: ABZR87_RS14415 - hemin uptake protein HemP, at 3,048,871 to 3,049,143 _RS14415 ABZR87_RS14420: ABZR87_RS14420 - heme-binding protein, at 3,049,332 to 3,049,745 _RS14420 ABZR87_RS14425: ABZR87_RS14425 - hypothetical protein, at 3,050,053 to 3,050,340 _RS14425
Group Condition ABZR87_RS14405 ABZR87_RS14410 ABZR87_RS14415 ABZR87_RS14420 ABZR87_RS14425
carbon source Sebacic (C) N.D. N.D. -1.9 -0.6 -0.8
carbon source Suberic (C) N.D. N.D. -3.3 +0.1 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. -1.8 -1.2 +0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. N.D. -1.5 -1.7 +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. N.D. -1.1 -1.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -1.6 -0.7 +0.2
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. N.D. -1.3 -0.6 +0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. N.D. -0.6 -1.3 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -1.5 -0.4 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. N.D. +0.5 -1.5 -0.5
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. N.D. +0.6 -2.0 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -1.3 -0.3 +0.2
carbon source Pimelic (C) N.D. N.D. -1.3 +0.1 +0.2
carbon source L-Glutamic (C) N.D. N.D. -1.6 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.5 -1.0 -0.2
soil soil EcoFAB sample 2; outgrowth in LB N.D. N.D. +0.5 -1.4 +0.1
carbon source Heptanoic (C) N.D. N.D. +0.5 -0.9 -0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. +0.6 -0.4 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. N.D. +0.6 -1.2 +0.3
root root EcoFAB sample 1; outgrowth in LB N.D. N.D. +0.8 -1.1 +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. N.D. +0.6 -1.0 +0.2
soil soil sample 8; outgrowth in LB N.D. N.D. +0.6 -0.9 +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. N.D. +1.1 -0.4 -0.3
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. +0.6 +0.5 -0.6
soil soil sample 5; outgrowth in LB N.D. N.D. +0.7 -0.6 +0.4
carbon source acetate (C) N.D. N.D. -0.6 +1.2 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. N.D. +1.6 -0.8 -0.0
soil soil EcoFAB sample 1; outgrowth in LB N.D. N.D. +1.8 -1.7 +0.9
nitrogen source nitrogen source nitrite 1mM N.D. N.D. +1.3 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +7.6 +0.9 +0.3
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