Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14225 and ABZR87_RS14230 are separated by 71 nucleotidesABZR87_RS14230 and ABZR87_RS14235 are separated by 25 nucleotidesABZR87_RS14235 and ABZR87_RS14240 are separated by 8 nucleotidesABZR87_RS14240 and ABZR87_RS14245 are separated by 104 nucleotides ABZR87_RS14225: ABZR87_RS14225 - tRNA-Val, at 3,005,131 to 3,005,205 _RS14225 ABZR87_RS14230: ABZR87_RS14230 - DNA polymerase III subunit epsilon, at 3,005,277 to 3,006,002 _RS14230 ABZR87_RS14235: ABZR87_RS14235 - formyltetrahydrofolate deformylase, at 3,006,028 to 3,006,894 _RS14235 ABZR87_RS14240: ABZR87_RS14240 - DUF4743 domain-containing protein, at 3,006,903 to 3,007,757 _RS14240 ABZR87_RS14245: ABZR87_RS14245 - hypothetical protein, at 3,007,862 to 3,008,257 _RS14245
Group Condition ABZR87_RS14225 ABZR87_RS14230 ABZR87_RS14235 ABZR87_RS14240 ABZR87_RS14245
nitrogen source nitrogen source nitrate 20mM N.D. N.D. -2.3 -0.0 -0.0
nitrogen source nitrogen source nitrate 5mM N.D. N.D. -1.6 -0.8 +0.2
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. -1.6 -0.1 -0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. N.D. -2.1 +0.5 -0.4
nitrogen source nitrogen source nitrate 5mM N.D. N.D. -1.8 -0.1 +0.1
carbon source Azelaic (C) N.D. N.D. -2.1 +0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. N.D. -1.3 -0.3 -0.2
carbon source Octanoic (C) N.D. N.D. -0.6 -0.9 -0.3
nitrogen source nitrogen source nitrate 20mM N.D. N.D. -1.8 -0.1 +0.2
root root sample 4; outgrowth in LB N.D. N.D. -1.2 -0.3 +0.1
root root sample 5; outgrowth in LB N.D. N.D. -1.6 +0.4 -0.2
soil soil sample 5; outgrowth in LB N.D. N.D. -1.5 +0.0 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. -0.6 -0.5 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.6 -0.6 -0.1
nitrogen source nitrogen source Ammonium chloride 20mM N.D. N.D. -1.1 -0.2 +0.1
root root sample 6; outgrowth in LB N.D. N.D. -1.1 +0.1 -0.2
nitrogen source nitrogen source Ammonium chloride 20mM N.D. N.D. -1.1 +0.1 +0.1
carbon source Carbon source D-Glucose 10 mM N.D. N.D. -1.0 +0.0 +0.1
carbon source D-Galactose (C) N.D. N.D. -0.8 -0.2 +0.3
carbon source Suberic (C) N.D. N.D. -1.0 +0.4 -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. N.D. -1.2 +0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.7 +0.3 -0.3
nitrogen source nitrogen source nitrite 1mM N.D. N.D. -1.0 +0.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. N.D. -0.9 -0.0 +0.3
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. -1.2 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.7 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.4 +0.9 -0.5
soil soil EcoFAB sample 2; outgrowth in LB N.D. N.D. -0.6 +1.1 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. N.D. -0.8 +0.7 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.4 +0.7 +0.1
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ABZR87_RS14230
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ABZR87_RS14245
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