Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14215 and ABZR87_RS14220 are separated by 54 nucleotidesABZR87_RS14220 and ABZR87_RS14225 are separated by 669 nucleotidesABZR87_RS14225 and ABZR87_RS14230 are separated by 71 nucleotidesABZR87_RS14230 and ABZR87_RS14235 are separated by 25 nucleotides ABZR87_RS14215: ABZR87_RS14215 - YeaH/YhbH family protein, at 3,001,222 to 3,002,484 _RS14215 ABZR87_RS14220: ABZR87_RS14220 - PrkA family serine protein kinase, at 3,002,539 to 3,004,461 _RS14220 ABZR87_RS14225: ABZR87_RS14225 - tRNA-Val, at 3,005,131 to 3,005,205 _RS14225 ABZR87_RS14230: ABZR87_RS14230 - DNA polymerase III subunit epsilon, at 3,005,277 to 3,006,002 _RS14230 ABZR87_RS14235: ABZR87_RS14235 - formyltetrahydrofolate deformylase, at 3,006,028 to 3,006,894 _RS14235
Group Condition ABZR87_RS14215 ABZR87_RS14220 ABZR87_RS14225 ABZR87_RS14230 ABZR87_RS14235
soil soil EcoFAB sample 1; outgrowth in LB -1.0 -0.5 N.D. N.D. -2.1
carbon source Azelaic (C) -0.1 +0.1 N.D. N.D. -2.1
nitrogen source nitrogen source nitrate 20mM +0.2 +0.1 N.D. N.D. -2.3
soil soil sample 5; outgrowth in LB -0.3 -0.2 N.D. N.D. -1.5
nitrogen source nitrogen source nitrate 5mM -0.1 -0.1 N.D. N.D. -1.8
nitrogen source nitrogen source nitrate 20mM -0.1 +0.1 N.D. N.D. -1.8
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.4 -0.4 N.D. N.D. -1.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -0.3 N.D. N.D. -1.3
soil soil sample 1; outgrowth in LB -0.4 -0.2 N.D. N.D. -1.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.3 -0.4 N.D. N.D. -0.8
nitrogen source nitrogen source nitrate 5mM +0.1 +0.0 N.D. N.D. -1.6
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.5 -0.4 N.D. N.D. -0.4
soil soil sample 8; outgrowth in LB -0.5 -0.3 N.D. N.D. -0.6
nitrogen source nitrogen source nitrite 1mM -0.2 -0.1 N.D. N.D. -1.0
nitrogen source nitrogen source Ammonium chloride 20mM -0.1 -0.0 N.D. N.D. -1.1
soil soil EcoFAB sample 2; outgrowth in LB -0.5 -0.1 N.D. N.D. -0.6
root root sample 5; outgrowth in LB +0.3 +0.2 N.D. N.D. -1.6
nitrogen source nitrogen source nitrite 0.5mM +0.3 +0.2 N.D. N.D. -1.6
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +0.1 N.D. N.D. -1.2
root root sample 4; outgrowth in LB +0.1 +0.1 N.D. N.D. -1.2
nitrogen source nitrogen source Ammonium chloride 20mM +0.1 +0.1 N.D. N.D. -1.1
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.3 N.D. N.D. -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.2 N.D. N.D. -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.6 +0.6 N.D. N.D. -0.9
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.7 +0.4 N.D. N.D. -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.9 +1.2 N.D. N.D. -0.8
carbon source acetate (C) +0.7 +0.5 N.D. N.D. -0.0
carbon source acetate (C) +0.7 +0.6 N.D. N.D. -0.0
carbon source Disodium Glutarate (C) +1.0 +0.8 N.D. N.D. +0.3
carbon source Disodium Glutarate (C) +1.1 +0.9 N.D. N.D. +0.1
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ABZR87_RS14215
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ABZR87_RS14220
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