Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS14120 and ABZR87_RS14125 are separated by 108 nucleotidesABZR87_RS14125 and ABZR87_RS14130 are separated by 58 nucleotidesABZR87_RS14130 and ABZR87_RS14135 are separated by 20 nucleotidesABZR87_RS14135 and ABZR87_RS14140 are separated by 195 nucleotides ABZR87_RS14120: ABZR87_RS14120 - RlmE family RNA methyltransferase, at 2,981,709 to 2,982,374 _RS14120 ABZR87_RS14125: ABZR87_RS14125 - YhbY family RNA-binding protein, at 2,982,483 to 2,982,983 _RS14125 ABZR87_RS14130: ABZR87_RS14130 - DUF4149 domain-containing protein, at 2,983,042 to 2,983,509 _RS14130 ABZR87_RS14135: ABZR87_RS14135 - transcription elongation factor GreA, at 2,983,530 to 2,984,006 _RS14135 ABZR87_RS14140: ABZR87_RS14140 - carbamoyl-phosphate synthase large subunit, at 2,984,202 to 2,987,447 _RS14140
Group Condition ABZR87_RS14120 ABZR87_RS14125 ABZR87_RS14130 ABZR87_RS14135 ABZR87_RS14140
carbon source Octanoic (C) N.D. -0.1 -0.3 -3.7 N.D.
carbon source Octanoic (C) N.D. -1.0 +0.3 -2.7 N.D.
carbon source Sebacic (C) N.D. -0.9 -0.6 -0.9 N.D.
root root sample 6; outgrowth in LB N.D. -0.5 -0.4 -1.3 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.4 +0.1 -1.7 N.D.
phage Ra3_1 N.D. -0.5 -0.1 -1.4 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.1 -0.1 +0.4 N.D.
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. -0.7 -0.1 -0.9 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 +0.1 -0.5 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -1.0 +0.1 -0.9 N.D.
phage Ra1_0.01 N.D. -0.3 -0.2 -1.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 +0.0 -0.6 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. -0.7 +0.2 -1.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.4 +0.1 -1.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 -0.0 -0.1 N.D.
phage Ra3_0.1 N.D. -0.6 -0.3 -0.6 N.D.
micoeukaryotes C.elegans, mixed culture-1 N.D. -0.5 +0.2 -1.1 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -0.9 -0.1 -0.4 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. +0.4 -0.2 -1.4 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.3 +0.1 -1.0 N.D.
root root sample 5; outgrowth in LB N.D. +0.3 +0.4 -1.7 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.3 +0.1 -1.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.2 -0.1 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 +0.4 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 +0.3 -0.2 N.D.
carbon source butyrate (C) N.D. +0.5 +0.0 -1.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.3 +0.6 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.7 +0.2 -0.5 N.D.
carbon source Heptanoic (C) N.D. +0.6 +0.3 -0.4 N.D.
carbon source Dodecandioic (C) N.D. +0.4 +0.7 -0.3 N.D.
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