Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS13965 and ABZR87_RS13970 are separated by 145 nucleotidesABZR87_RS13970 and ABZR87_RS13975 are separated by 17 nucleotidesABZR87_RS13975 and ABZR87_RS13980 are separated by 145 nucleotidesABZR87_RS13980 and ABZR87_RS13985 are separated by 91 nucleotides ABZR87_RS13965: ABZR87_RS13965 - Lrp/AsnC family transcriptional regulator, at 2,949,317 to 2,949,787 _RS13965 ABZR87_RS13970: ABZR87_RS13970 - aminotransferase class V-fold PLP-dependent enzyme, at 2,949,933 to 2,951,411 _RS13970 ABZR87_RS13975: ABZR87_RS13975 - Lrp/AsnC family transcriptional regulator, at 2,951,429 to 2,951,950 _RS13975 ABZR87_RS13980: ABZR87_RS13980 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,952,096 to 2,953,112 _RS13980 ABZR87_RS13985: ABZR87_RS13985 - alpha-ketoglutarate dehydrogenase, at 2,953,204 to 2,955,903 _RS13985
Group Condition ABZR87_RS13965 ABZR87_RS13970 ABZR87_RS13975 ABZR87_RS13980 ABZR87_RS13985
carbon source Sebacic (C) -0.4 -0.1 -1.1 -0.5 +0.0
root root sample 6; outgrowth in LB -0.4 +0.3 -0.8 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 -0.1 -1.1 +0.1
carbon source Azelaic (C) -0.6 +0.2 -0.0 -0.2 -0.1
soil soil sample 1; outgrowth in LB -0.1 +0.2 -0.7 -0.1 +0.0
nitrogen source nitrogen source nitrite 0.5mM -0.5 +0.2 -0.4 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +0.2 +0.3 -0.4 +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.1 -0.8 +0.3 +0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.0 -0.6 +0.1 -0.1
root root EcoFAB sample 1; outgrowth in LB +0.4 -0.2 -0.1 -0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +0.1 -0.5 -0.2
carbon source Octanoic (C) +0.4 -0.1 +0.7 -0.8 -0.3
carbon source Protocatechuic Acid (C) -0.3 +0.2 +0.4 -0.2 -0.0
carbon source Dodecandioic (C) -0.5 +0.3 +0.4 -0.2 -0.1
carbon source Pimelic (C) -0.4 +0.2 +0.4 -0.1 +0.0
phage Ra3_0.1 -0.3 +0.1 +0.4 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.4 +0.1 -0.0 +0.2
nitrogen source nitrogen source nitrate 20mM -0.5 +0.1 +0.4 +0.1 +0.2
soil soil sample 3; outgrowth in LB -0.1 +0.3 +0.2 +0.3 -0.2
phage Ra3_1 +0.1 +0.1 +0.5 -0.1 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 -0.1 +0.2 +0.2 -0.1
carbon source Dodecandioic (C) +0.4 +0.1 +0.4 -0.1 +0.0
rhizosphere rhizosphere sample 3; outgrowth in LB +0.4 +0.2 +0.3 -0.4 +0.4
carbon source propionate (C) +0.1 +0.2 +0.8 -0.1 +0.0
root root sample 5; outgrowth in LB +0.4 -0.0 +0.1 +0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.3 +1.2 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.5 +0.6 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.3 +0.1 +0.9 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.9 -0.0 +0.4 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 +0.3 +1.0 -0.1 -0.1
remove
ABZR87_RS13965
plot		 remove
ABZR87_RS13970
plot		 remove
ABZR87_RS13975		 remove
ABZR87_RS13980
plot		 remove
ABZR87_RS13985
plot