Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS13955 and ABZR87_RS13960 are separated by 76 nucleotidesABZR87_RS13960 and ABZR87_RS13965 are separated by 55 nucleotidesABZR87_RS13965 and ABZR87_RS13970 are separated by 145 nucleotidesABZR87_RS13970 and ABZR87_RS13975 are separated by 17 nucleotides ABZR87_RS13955: ABZR87_RS13955 - type VI secretion system baseplate subunit TssG, at 2,947,083 to 2,948,126 _RS13955 ABZR87_RS13960: ABZR87_RS13960 - type VI secretion system ImpA family N-terminal domain-containing protein, at 2,948,203 to 2,949,261 _RS13960 ABZR87_RS13965: ABZR87_RS13965 - Lrp/AsnC family transcriptional regulator, at 2,949,317 to 2,949,787 _RS13965 ABZR87_RS13970: ABZR87_RS13970 - aminotransferase class V-fold PLP-dependent enzyme, at 2,949,933 to 2,951,411 _RS13970 ABZR87_RS13975: ABZR87_RS13975 - Lrp/AsnC family transcriptional regulator, at 2,951,429 to 2,951,950 _RS13975
Group Condition ABZR87_RS13955 ABZR87_RS13960 ABZR87_RS13965 ABZR87_RS13970 ABZR87_RS13975
carbon source Sebacic (C) +0.2 -0.1 -0.4 -0.1 -1.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 -0.3 +0.1 -0.1 -0.8
carbon source Azelaic (C) -0.1 -0.1 -0.6 +0.2 -0.0
soil soil sample 1; outgrowth in LB -0.1 +0.1 -0.1 +0.2 -0.7
root root sample 6; outgrowth in LB +0.2 +0.1 -0.4 +0.3 -0.8
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.0 -0.5 +0.2 -0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.4 -0.5 +0.3 +0.0 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.2 -0.6 +0.2 +0.3
carbon source Pimelic (C) +0.0 -0.2 -0.4 +0.2 +0.4
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 +0.2 +0.1 -0.2 -0.3
nitrogen source nitrogen source nitrate 20mM +0.1 -0.0 -0.5 +0.1 +0.4
soil soil EcoFAB sample 1; outgrowth in LB -0.5 +0.0 +0.3 +0.2 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 -0.1 +0.5 -0.1 +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 +0.2 -0.2 +0.2 +0.2
carbon source acetate (C) -0.3 +0.1 +0.0 -0.0 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 +0.3 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 -0.5 +0.4 +0.1
carbon source Dodecandioic (C) +0.4 +0.0 -0.5 +0.3 +0.4
root root EcoFAB sample 1; outgrowth in LB +0.0 +0.6 +0.4 -0.2 -0.1
carbon source Protocatechuic Acid (C) +0.2 +0.2 -0.3 +0.2 +0.4
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 +0.1 +0.4 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.1 -0.1 +0.3 +0.1
carbon source Dodecandioic (C) -0.1 +0.1 +0.4 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 -0.2 +0.5 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 -0.3 +0.3 +1.2
carbon source Octanoic (C) +0.2 -0.2 +0.4 -0.1 +0.7
carbon source propionate (C) +0.0 +0.0 +0.1 +0.2 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.4 +0.5 +0.1 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +0.4 +0.9 -0.0 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.3 +0.9 +0.3 +1.0
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ABZR87_RS13955
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ABZR87_RS13960
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ABZR87_RS13975
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