Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS13760 and ABZR87_RS13765 are separated by 22 nucleotidesABZR87_RS13765 and ABZR87_RS13770 are separated by 10 nucleotidesABZR87_RS13770 and ABZR87_RS13775 are separated by 153 nucleotidesABZR87_RS13775 and ABZR87_RS13780 are separated by 13 nucleotides ABZR87_RS13760: ABZR87_RS13760 - 3-hydroxybutyrate dehydrogenase, at 2,902,843 to 2,903,622 _RS13760 ABZR87_RS13765: ABZR87_RS13765 - CoA transferase subunit B, at 2,903,645 to 2,904,280 _RS13765 ABZR87_RS13770: ABZR87_RS13770 - CoA transferase subunit A, at 2,904,291 to 2,904,992 _RS13770 ABZR87_RS13775: ABZR87_RS13775 - LuxR C-terminal-related transcriptional regulator, at 2,905,146 to 2,905,691 _RS13775 ABZR87_RS13780: ABZR87_RS13780 - SDR family oxidoreductase, at 2,905,705 to 2,906,490 _RS13780
Group Condition ABZR87_RS13760 ABZR87_RS13765 ABZR87_RS13770 ABZR87_RS13775 ABZR87_RS13780
soil soil EcoFAB sample 1; outgrowth in LB -0.2 N.D. -3.1 +0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 N.D. -0.6 -0.8 -0.6
carbon source Sebacic (C) -0.6 N.D. -1.8 -0.2 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. -1.2 -0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. -0.8 -0.5 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 N.D. -2.0 +0.0 -0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 N.D. -2.1 +0.4 -0.0
carbon source butyrate (C) -0.6 N.D. -0.8 -0.6 +0.0
root root sample 6; outgrowth in LB -0.4 N.D. -1.6 -0.2 +0.3
root root EcoFAB sample 2; outgrowth in LB -0.3 N.D. -1.9 +0.5 +0.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.2 N.D. -1.8 +0.2 +0.1
root root EcoFAB sample 1; outgrowth in LB -0.3 N.D. -1.9 +0.5 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -0.2 N.D. -2.0 +0.2 +0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.5 N.D. -1.6 +0.5 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 N.D. -1.4 +0.1 +0.1
carbon source Heptanoic (C) -0.1 N.D. -1.6 +0.2 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 N.D. -1.5 +0.1 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 N.D. -1.6 +0.1 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 N.D. -1.6 -0.1 +0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 N.D. -1.6 +0.1 +0.1
carbon source Heptanoic (C) -0.2 N.D. -1.3 +0.2 +0.2
carbon source Azelaic (C) -0.3 N.D. -1.2 +0.2 +0.3
carbon source Dodecandioic (C) -0.2 N.D. -1.5 +0.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 N.D. -1.7 -0.4 +0.0
carbon source Lauric (C) -0.1 N.D. -1.5 +0.4 +0.5
rhizosphere rhizosphere sample 3; outgrowth in LB -0.6 N.D. -0.7 +0.5 +0.1
carbon source Octanoic (C) -1.0 N.D. -0.7 +0.5 +0.7
carbon source Dodecandioic (C) +0.4 N.D. -1.3 +0.2 +0.4
carbon source Octanoic (C) -0.0 N.D. -1.0 +0.0 +0.9
root root sample 5; outgrowth in LB +1.1 N.D. -1.2 -0.3 +0.4
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