Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS13430 and ABZR87_RS13435 are separated by 58 nucleotidesABZR87_RS13435 and ABZR87_RS13440 overlap by 4 nucleotidesABZR87_RS13440 and ABZR87_RS13445 are separated by 356 nucleotidesABZR87_RS13445 and ABZR87_RS13450 are separated by 339 nucleotides ABZR87_RS13430: ABZR87_RS13430 - thioesterase family protein, at 2,843,894 to 2,844,337 _RS13430 ABZR87_RS13435: ABZR87_RS13435 - DMT family transporter, at 2,844,396 to 2,845,313 _RS13435 ABZR87_RS13440: ABZR87_RS13440 - histone deacetylase, at 2,845,310 to 2,846,317 _RS13440 ABZR87_RS13445: ABZR87_RS13445 - phasin family protein, at 2,846,674 to 2,847,255 _RS13445 ABZR87_RS13450: ABZR87_RS13450 - hypothetical protein, at 2,847,595 to 2,848,155 _RS13450
Group Condition ABZR87_RS13430 ABZR87_RS13435 ABZR87_RS13440 ABZR87_RS13445 ABZR87_RS13450
carbon source Heptanoic (C) +0.1 -0.3 +0.1 -2.9 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -0.3 -0.1 -2.5 -0.2
carbon source Dodecandioic (C) -0.3 -0.2 -0.1 -1.6 -0.5
soil soil EcoFAB sample 2; outgrowth in LB -0.0 +0.1 -0.2 -2.1 -0.3
carbon source Dodecandioic (C) -0.1 -0.2 +0.1 -1.8 -0.4
rhizosphere rhizosphere sample 3; outgrowth in LB -0.0 -0.2 +0.2 -2.3 +0.2
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.1 -0.2 -1.9 -0.1
carbon source Protocatechuic Acid (C) -0.2 -0.0 -0.0 -1.7 -0.2
carbon source Sebacic (C) -0.1 +0.1 -0.1 -1.8 -0.2
carbon source Sebacic (C) +0.1 -0.2 +0.2 -1.8 -0.3
carbon source Azelaic (C) -0.1 -0.3 +0.2 -1.6 +0.0
carbon source Lauric (C) +0.0 -0.2 +0.2 -1.7 +0.0
carbon source Heptanoic (C) +0.1 -0.2 +0.1 -1.4 -0.2
rhizosphere rhizosphere sample 4; outgrowth in LB -0.0 -0.0 -0.1 -1.5 +0.1
carbon source Protocatechuic Acid (C) +0.2 -0.1 -0.1 -1.5 +0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.2 -0.1 -0.2 -1.3 +0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.5 +0.2 -0.1 -1.9 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.0 +0.2 -0.9 -0.2
soil soil sample 5; outgrowth in LB -0.0 +0.0 +0.1 -1.3 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.2 +0.4 -1.3 +0.1
root root EcoFAB sample 2; outgrowth in LB -0.0 -0.3 -0.1 -1.1 +0.4
carbon source Octanoic (C) -0.2 +0.1 -0.8 +0.5 -0.4
rhizosphere rhizosphere sample 6; outgrowth in LB +0.2 +0.2 +0.0 -1.2 +0.1
root root sample 6; outgrowth in LB -0.1 +0.1 +0.2 -1.1 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 -0.3 +0.1 -0.6 +0.2
root root sample 4; outgrowth in LB +0.2 +0.1 +0.1 -1.0 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.2 -0.0 +0.4 -0.8 +0.2
root root sample 5; outgrowth in LB +0.5 -0.1 +0.6 -1.0 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 +0.2 -0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.3 -0.2 +0.8 -0.2
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ABZR87_RS13430
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ABZR87_RS13435
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ABZR87_RS13445
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ABZR87_RS13450
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