Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS13285 and ABZR87_RS13290 are separated by 404 nucleotidesABZR87_RS13290 and ABZR87_RS13295 are separated by 122 nucleotidesABZR87_RS13295 and ABZR87_RS13300 are separated by 89 nucleotidesABZR87_RS13300 and ABZR87_RS13305 are separated by 270 nucleotides ABZR87_RS13285: ABZR87_RS13285 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,816,478 to 2,817,032 _RS13285 ABZR87_RS13290: ABZR87_RS13290 - 3-ketoacyl-ACP reductase, at 2,817,437 to 2,818,177 _RS13290 ABZR87_RS13295: ABZR87_RS13295 - acetyl-CoA C-acetyltransferase, at 2,818,300 to 2,819,481 _RS13295 ABZR87_RS13300: ABZR87_RS13300 - class I poly(R)-hydroxyalkanoic acid synthase, at 2,819,571 to 2,821,364 _RS13300 ABZR87_RS13305: ABZR87_RS13305 - hypothetical protein, at 2,821,635 to 2,821,871 _RS13305
Group Condition ABZR87_RS13285 ABZR87_RS13290 ABZR87_RS13295 ABZR87_RS13300 ABZR87_RS13305
carbon source Dodecandioic (C) -3.5 -6.3 +0.5 -3.4 +0.3
carbon source Dodecandioic (C) -3.1 -6.9 +0.6 -3.1 +0.4
carbon source Octanoic (C) -4.5 -4.7 -0.3 -3.2 +0.7
carbon source Azelaic (C) -3.9 -4.7 -0.0 -3.5 +0.4
carbon source Sebacic (C) -4.2 -4.5 +0.1 -3.1 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -4.5 -2.5 -0.7 -2.9 -0.6
carbon source Octanoic (C) -3.0 -5.0 -0.3 -2.5 -0.3
carbon source Heptanoic (C) -5.4 -1.9 -0.0 -3.5 -0.1
carbon source Heptanoic (C) -5.1 -1.6 -0.2 -3.2 -0.0
carbon source Lauric (C) -2.3 -3.7 -0.4 -3.9 +0.2
nitrogen source nitrogen source Ammonium chloride 20mM -2.1 -3.1 +0.0 -4.3 +0.3
carbon source D-Glucose (C) -1.9 -3.2 +0.3 -4.2 -0.2
carbon source D-Glucose (C) -3.2 -2.5 -0.2 -3.4 +0.1
carbon source D-Glucose (C) -3.4 -2.7 -0.2 -3.3 +0.6
soil soil EcoFAB sample 1; outgrowth in LB -4.7 -1.9 -0.4 -2.4 +1.0
carbon source Sebacic (C) -3.7 -3.0 +0.1 -1.9 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -4.9 -1.1 -0.1 -2.2 +0.2
carbon source D-Glucose (C) -1.8 -2.3 +0.0 -3.6 -0.4
carbon source Carbon source D-Glucose 10 mM -1.4 -2.1 -0.2 -4.0 -0.2
carbon source Carbon source D-Glucose 10 mM -1.3 -2.5 -0.3 -3.4 -0.3
carbon source propionate (C) -1.9 -2.7 -0.2 -3.0 -0.0
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -1.8 -2.6 -0.0 -2.8 -0.2
root root EcoFAB sample 1; outgrowth in LB -3.3 -1.8 -0.6 -2.1 +0.4
nitrogen source nitrogen source nitrate 5mM -1.2 -2.5 +0.2 -4.0 +0.1
soil soil sample 5; outgrowth in LB -1.3 -2.2 -0.7 -2.9 -0.2
soil soil EcoFAB sample 2; outgrowth in LB -3.9 -0.9 -0.7 -1.7 -0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -3.3 -1.2 +0.0 -2.8 +0.0
nitrogen source nitrogen source Ammonium chloride 20mM -1.3 -2.3 -0.0 -3.6 -0.0
nitrogen source nitrogen source nitrate 20mM -2.1 -1.3 +0.2 -3.8 +0.2
root root EcoFAB sample 2; outgrowth in LB -3.4 -2.0 -0.3 -1.6 +0.6
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