Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12850 and ABZR87_RS12855 are separated by 101 nucleotidesABZR87_RS12855 and ABZR87_RS12860 are separated by 79 nucleotidesABZR87_RS12860 and ABZR87_RS12865 overlap by 4 nucleotidesABZR87_RS12865 and ABZR87_RS12870 are separated by 117 nucleotides ABZR87_RS12850: ABZR87_RS12850 - hypothetical protein, at 2,734,247 to 2,734,441 _RS12850 ABZR87_RS12855: ABZR87_RS12855 - MFS transporter, at 2,734,543 to 2,735,949 _RS12855 ABZR87_RS12860: ABZR87_RS12860 - CaiB/BaiF CoA-transferase family protein, at 2,736,029 to 2,737,216 _RS12860 ABZR87_RS12865: ABZR87_RS12865 - acyl-CoA dehydrogenase family protein, at 2,737,213 to 2,738,976 _RS12865 ABZR87_RS12870: ABZR87_RS12870 - LysR family transcriptional regulator, at 2,739,094 to 2,739,990 _RS12870
Group Condition ABZR87_RS12850 ABZR87_RS12855 ABZR87_RS12860 ABZR87_RS12865 ABZR87_RS12870
carbon source Disodium Glutarate (C) N.D. -0.1 -0.6 -0.9 -0.7
carbon source Disodium Glutarate (C) N.D. +0.2 -0.8 -0.4 -0.5
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.4 -0.0 -0.3 -1.5
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -0.2 -0.4 +0.2 -0.5
root root sample 5; outgrowth in LB N.D. -0.1 -0.2 +0.1 -0.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.2 +0.3 -0.1 -1.2
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.1 +0.2 -0.7 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 +0.4 +0.1 -0.4
root root EcoFAB sample 2; outgrowth in LB N.D. -0.2 -0.3 +0.3 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.1 +0.3 -0.4 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.4 +0.1 +0.5 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.1 +0.4 +0.0
nitrogen source nitrogen source nitrate 5mM N.D. -0.2 -0.2 +0.0 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -0.0 +0.4 -0.3
nitrogen source nitrogen source nitrate 5mM N.D. -0.3 +0.1 +0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 +0.2 +0.2 +0.2
carbon source Protocatechuic Acid (C) N.D. -0.3 +0.3 +0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.4 +0.2 +0.2 -0.4
carbon source acetate (C) N.D. +0.0 +0.1 -0.2 +0.6
phage Ra1_0.01 N.D. -0.2 +0.2 +0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.4 -0.1 +0.7 -0.3
carbon source Octanoic (C) N.D. -0.3 +0.0 +0.2 +0.8
carbon source butyrate (C) N.D. -0.1 +0.1 +0.4 +0.3
carbon source Octanoic (C) N.D. +0.2 -0.1 +0.4 +0.3
carbon source Pimelic (C) N.D. -0.0 +0.3 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -0.1 +0.2 +0.6
carbon source Pimelic (C) N.D. -0.1 +0.2 +0.2 +0.4
carbon source adipate (C) N.D. +0.1 +0.2 +0.2 +0.5
carbon source adipate (C) N.D. +0.0 +0.2 +0.2 +0.5
carbon source Suberic (C) N.D. +0.0 +0.2 +0.2 +0.7
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