Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12830 and ABZR87_RS12835 overlap by 4 nucleotidesABZR87_RS12835 and ABZR87_RS12840 are separated by 229 nucleotidesABZR87_RS12840 and ABZR87_RS12845 are separated by 154 nucleotidesABZR87_RS12845 and ABZR87_RS12850 are separated by 160 nucleotides ABZR87_RS12830: ABZR87_RS12830 - MFS transporter, at 2,728,329 to 2,729,567 _RS12830 ABZR87_RS12835: ABZR87_RS12835 - SidA/IucD/PvdA family monooxygenase, at 2,729,564 to 2,731,036 _RS12835 ABZR87_RS12840: ABZR87_RS12840 - TonB-dependent siderophore receptor, at 2,731,266 to 2,733,401 _RS12840 ABZR87_RS12845: ABZR87_RS12845 - sigma-70 family RNA polymerase sigma factor, at 2,733,556 to 2,734,086 _RS12845 ABZR87_RS12850: ABZR87_RS12850 - hypothetical protein, at 2,734,247 to 2,734,441 _RS12850
Group Condition ABZR87_RS12830 ABZR87_RS12835 ABZR87_RS12840 ABZR87_RS12845 ABZR87_RS12850
carbon source Lauric (C) -1.1 +0.8 -3.9 -3.5 N.D.
soil soil sample 5; outgrowth in LB -0.7 +0.2 -0.8 -0.8 N.D.
control NoPredeControl -0.1 -0.0 -1.1 -0.3 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 -0.1 -0.9 +0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.2 -0.1 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 +0.0 -0.7 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 -0.2 +0.0 -0.5 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 -0.0 -0.6 N.D.
carbon source Octanoic (C) -0.2 +0.0 +0.0 -0.6 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 +0.0 -0.4 -0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.3 +0.0 +0.1 -0.4 N.D.
root root EcoFAB sample 2; outgrowth in LB -0.4 -0.2 +0.2 -0.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.0 +0.1 -0.3 -0.4 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.0 +0.1 -0.4 -0.3 N.D.
carbon source Sebacic (C) -0.5 +0.3 +0.3 -0.6 N.D.
micoeukaryotes C.elegans, mixed culture-1 +0.1 +0.1 -0.6 -0.0 N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB -0.3 +0.2 +0.1 -0.3 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 +0.1 -0.5 +0.3 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.2 +0.1 -0.4 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.2 +0.3 +0.1 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.1 -0.1 +0.4 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.2 +0.3 +0.2 -0.1 N.D.
phage Ra1_0.1 -0.2 +0.2 +0.3 -0.3 N.D.
carbon source Octanoic (C) -0.2 +0.2 -0.2 +0.4 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.3 +0.2 -0.0 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.0 -0.1 +0.6 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.1 -0.1 -0.1 +0.5 N.D.
phage Ra3_1 +0.4 +0.0 +0.2 +0.2 N.D.
carbon source Dodecandioic (C) +0.3 +0.2 +0.2 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.3 +0.4 -0.1 N.D.
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