Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12715 and ABZR87_RS12720 are separated by 70 nucleotidesABZR87_RS12720 and ABZR87_RS12725 are separated by 77 nucleotidesABZR87_RS12725 and ABZR87_RS12730 are separated by 294 nucleotidesABZR87_RS12730 and ABZR87_RS12735 are separated by 148 nucleotides ABZR87_RS12715: ABZR87_RS12715 - LysR family transcriptional regulator, at 2,695,102 to 2,696,028 _RS12715 ABZR87_RS12720: ABZR87_RS12720 - serine hydrolase, at 2,696,099 to 2,697,337 _RS12720 ABZR87_RS12725: ABZR87_RS12725 - autotransporter-associated beta strand repeat-containing protein, at 2,697,415 to 2,701,797 _RS12725 ABZR87_RS12730: ABZR87_RS12730 - phosphoribosylformylglycinamidine synthase, at 2,702,092 to 2,706,192 _RS12730 ABZR87_RS12735: ABZR87_RS12735 - winged helix DNA-binding protein, at 2,706,341 to 2,706,910 _RS12735
Group Condition ABZR87_RS12715 ABZR87_RS12720 ABZR87_RS12725 ABZR87_RS12730 ABZR87_RS12735
carbon source Octanoic (C) -0.0 -0.1 -0.2 N.D. -2.4
carbon source Sebacic (C) -0.0 -0.1 -0.2 N.D. -2.0
carbon source Octanoic (C) +0.6 -0.4 -0.0 N.D. -2.3
carbon source Dodecandioic (C) -0.0 -0.2 +0.1 N.D. -1.9
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.1 +0.1 -0.2 N.D. -1.6
carbon source Protocatechuic Acid (C) -0.1 -0.2 +0.1 N.D. -1.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.0 -0.1 -0.2 N.D. -1.3
carbon source Heptanoic (C) +0.0 +0.0 -0.1 N.D. -1.5
soil soil EcoFAB sample 1; outgrowth in LB +0.2 +0.3 -0.0 N.D. -1.8
carbon source Dodecandioic (C) +0.3 +0.1 +0.1 N.D. -1.7
carbon source Valeric (C) -0.2 +0.0 +0.1 N.D. -1.1
carbon source Azelaic (C) +0.0 -0.1 +0.1 N.D. -1.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 +0.0 +0.3 N.D. -1.0
root root sample 6; outgrowth in LB -0.4 +0.8 -0.3 N.D. -1.1
rhizosphere rhizosphere sample 8; outgrowth in LB -0.4 +0.0 +0.3 N.D. -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.2 -0.0 N.D. -1.2
micoeukaryotes C.elegans, mixed culture-2 +0.2 +0.1 -0.0 N.D. -1.1
root root EcoFAB sample 1; outgrowth in LB -0.1 +0.1 +0.2 N.D. -1.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 +0.1 +0.1 N.D. -1.2
root root sample 5; outgrowth in LB -0.5 +0.2 +0.6 N.D. -1.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.2 -0.0 +0.1 N.D. -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.1 +0.3 N.D. -0.8
carbon source Valeric (C) +0.3 -0.0 +0.1 N.D. -1.0
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.2 +0.1 N.D. -1.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.3 +0.2 -0.1 N.D. -0.9
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 +0.7 N.D. -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 +0.1 N.D. -0.9
nitrogen source nitrogen source nitrate 20mM +0.6 +0.1 -0.3 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.1 +0.3 N.D. -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 +0.4 N.D. -0.7
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