Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12680 and ABZR87_RS12685 overlap by 4 nucleotidesABZR87_RS12685 and ABZR87_RS12690 are separated by 519 nucleotidesABZR87_RS12690 and ABZR87_RS12695 are separated by 71 nucleotidesABZR87_RS12695 and ABZR87_RS12700 are separated by 103 nucleotides ABZR87_RS12680: ABZR87_RS12680 - response regulator, at 2,686,252 to 2,686,932 _RS12680 ABZR87_RS12685: ABZR87_RS12685 - sensor histidine kinase, at 2,686,929 to 2,688,347 _RS12685 ABZR87_RS12690: ABZR87_RS12690 - ABC transporter ATP-binding protein, at 2,688,867 to 2,689,955 _RS12690 ABZR87_RS12695: ABZR87_RS12695 - ABC transporter substrate-binding protein, at 2,690,027 to 2,691,067 _RS12695 ABZR87_RS12700: ABZR87_RS12700 - ABC transporter permease, at 2,691,171 to 2,692,439 _RS12700
Group Condition ABZR87_RS12680 ABZR87_RS12685 ABZR87_RS12690 ABZR87_RS12695 ABZR87_RS12700
root root sample 6; outgrowth in LB -0.6 -1.0 -0.2 -0.3 -0.1
carbon source Sebacic (C) +0.1 -1.0 -0.0 -0.6 -0.0
carbon source Octanoic (C) -0.0 -0.6 -0.5 -0.2 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.6 -0.0 -0.5 -0.1 +0.3
carbon source L-Glutamic (C) -0.1 -1.1 -0.1 +0.6 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.5 +0.2 -0.5 -0.1 -0.0
nitrogen source nitrogen source nitrite 0.5mM +0.3 -0.6 -0.2 -0.1 +0.0
carbon source Azelaic (C) -0.8 +0.4 +0.2 -0.2 -0.2
nitrogen source nitrogen source nitrate 5mM -0.0 -0.2 -0.6 +0.3 -0.1
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.4 -0.1 +0.3 -0.2
carbon source Octanoic (C) -0.7 +0.1 +0.0 +0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.3 -0.5 +0.3 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 -0.2 -0.1 -0.0 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.6 +0.2 +0.1 -0.1 +0.4
carbon source Valeric (C) -0.7 +0.4 +0.2 +0.2 -0.1
soil soil EcoFAB sample 1; outgrowth in LB +1.0 -0.1 -0.1 -0.3 -0.4
phage Ra3_1 -0.7 +0.4 +0.2 +0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.1 -0.3 +0.2 +0.1
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.6 +0.1 -0.2 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 +0.7 -0.2 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 +0.1 +0.2 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 +0.6 +0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.7 -0.4 +0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 +0.1 -0.1 +0.2 -0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.1 +0.3 +0.3 +0.3 -0.0
root root sample 5; outgrowth in LB +1.0 +0.9 -0.4 -0.3 -0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.0 +0.8 +0.2 -0.1 +0.1
rhizosphere rhizosphere sample 4; outgrowth in LB +0.6 +0.6 -0.0 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 +0.1 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.7 -0.1 +0.4 +0.1
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ABZR87_RS12680
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ABZR87_RS12685
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ABZR87_RS12695
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ABZR87_RS12700
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