Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12595 and ABZR87_RS12600 are separated by 67 nucleotidesABZR87_RS12600 and ABZR87_RS12605 overlap by 1 nucleotidesABZR87_RS12605 and ABZR87_RS12610 overlap by 4 nucleotidesABZR87_RS12610 and ABZR87_RS12615 are separated by 0 nucleotides ABZR87_RS12595: ABZR87_RS12595 - amino acid permease, at 2,667,794 to 2,669,320 _RS12595 ABZR87_RS12600: ABZR87_RS12600 - ABC transporter ATP-binding protein, at 2,669,388 to 2,670,107 _RS12600 ABZR87_RS12605: ABZR87_RS12605 - ABC transporter ATP-binding protein, at 2,670,107 to 2,670,895 _RS12605 ABZR87_RS12610: ABZR87_RS12610 - branched-chain amino acid ABC transporter permease, at 2,670,892 to 2,672,226 _RS12610 ABZR87_RS12615: ABZR87_RS12615 - branched-chain amino acid ABC transporter permease, at 2,672,227 to 2,673,174 _RS12615
Group Condition ABZR87_RS12595 ABZR87_RS12600 ABZR87_RS12605 ABZR87_RS12610 ABZR87_RS12615
carbon source Pimelic (C) +0.1 -4.1 -4.7 -4.1 -2.7
carbon source Pimelic (C) +0.1 -3.5 -3.8 -3.1 -4.5
carbon source Suberic (C) +0.2 -1.7 -1.5 -2.5 -2.0
carbon source adipate (C) +0.2 -1.2 -1.1 -0.8 -0.9
carbon source adipate (C) +0.1 -1.0 -0.8 -0.6 -1.4
carbon source Octanoic (C) +0.4 -0.9 +0.3 -0.5 -2.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 -0.2 -1.1 -0.5 -1.2
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.4 -0.8 -0.5 -0.3 -0.9
carbon source Pimelic (C) -0.2 -0.5 -0.5 -0.6 -0.6
carbon source Valeric (C) +0.1 -0.7 +0.2 -0.5 -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.7 -0.8 -0.4 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.0 -0.3 -1.1 -0.0 +0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -0.1 +0.4 -1.0 +0.3
carbon source Heptanoic (C) +0.9 -0.4 +0.2 -0.1 -1.1
carbon source butyrate (C) +0.3 -0.7 +0.4 -0.2 -0.3
soil soil EcoFAB sample 1; outgrowth in LB -0.9 +0.6 +0.1 -0.6 +0.5
root root sample 5; outgrowth in LB +0.3 +0.0 -0.9 -0.2 +0.8
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 +0.6 -0.4 -0.4 +0.5
carbon source Heptanoic (C) +0.9 -0.1 +0.3 -0.1 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -1.0 +1.4 -0.4 -0.3
carbon source Lauric (C) +0.7 -0.1 +0.6 +0.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 +1.5 +0.1 -0.5
root root EcoFAB sample 2; outgrowth in LB -0.3 +0.1 +1.2 -0.2 +0.5
nitrogen source nitrogen source nitrite 0.5mM +0.2 +0.3 +1.2 +0.4 -0.5
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.2 +1.5 +0.1 +0.6
carbon source Protocatechuic Acid (C) +0.5 -0.1 +1.0 +0.4 +0.2
carbon source Protocatechuic Acid (C) +0.4 +0.4 +0.1 +0.1 +1.0
carbon source Dodecandioic (C) +0.6 +0.4 +0.2 +0.4 +0.8
carbon source Dodecandioic (C) +0.8 +0.4 +0.6 +0.7 +0.1
carbon source Sebacic (C) +0.5 +0.9 +0.3 +0.7 +1.0
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ABZR87_RS12595
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ABZR87_RS12600
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ABZR87_RS12610
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ABZR87_RS12615
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