Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12560 and ABZR87_RS12565 are separated by 32 nucleotidesABZR87_RS12565 and ABZR87_RS12570 are separated by 23 nucleotidesABZR87_RS12570 and ABZR87_RS12575 are separated by 162 nucleotidesABZR87_RS12575 and ABZR87_RS12580 are separated by 58 nucleotides ABZR87_RS12560: ABZR87_RS12560 - PaaI family thioesterase, at 2,658,517 to 2,658,951 _RS12560 ABZR87_RS12565: ABZR87_RS12565 - SDR family oxidoreductase, at 2,658,984 to 2,659,766 _RS12565 ABZR87_RS12570: ABZR87_RS12570 - acyl-CoA dehydrogenase, at 2,659,790 to 2,661,658 _RS12570 ABZR87_RS12575: ABZR87_RS12575 - acetyl-CoA C-acyltransferase, at 2,661,821 to 2,662,999 _RS12575 ABZR87_RS12580: ABZR87_RS12580 - bifunctional nicotinamidase/pyrazinamidase, at 2,663,058 to 2,663,699 _RS12580
Group Condition ABZR87_RS12560 ABZR87_RS12565 ABZR87_RS12570 ABZR87_RS12575 ABZR87_RS12580
carbon source Dodecandioic (C) N.D. +0.6 +0.6 -4.8 -1.5
carbon source Dodecandioic (C) N.D. +0.5 +0.4 -3.8 -1.4
carbon source Sebacic (C) N.D. +0.2 +0.3 -2.5 -0.6
carbon source Azelaic (C) N.D. +0.3 +0.4 -2.9 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.1 -0.3 -0.8
carbon source Sebacic (C) N.D. +0.3 +0.3 -1.7 -0.4
carbon source adipate (C) N.D. -0.3 -0.1 -0.8 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -1.1 -0.2 -0.7 +0.7
nitrogen source nitrogen source nitrate 5mM N.D. -0.8 +0.0 -0.0 -0.4
phage Ra3_1 N.D. -0.1 -0.1 -0.7 -0.4
carbon source Lauric (C) N.D. +0.2 +0.4 -1.2 -0.5
carbon source Octanoic (C) N.D. -0.7 +0.4 +0.2 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 -0.2 -0.6 -0.8
soil soil EcoFAB sample 1; outgrowth in LB N.D. +0.4 -0.4 -0.6 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 +0.1 -1.2 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 -0.2 -0.7 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.3 -0.2 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 -0.3 -0.1 -0.4
phage Ra1_0.1 N.D. +0.4 +0.2 -0.3 -0.4
root root sample 6; outgrowth in LB N.D. +0.4 +0.4 -0.8 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 -0.0 -0.7 +0.2
root root sample 4; outgrowth in LB N.D. +0.2 +0.4 -0.5 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.1 -0.4 +0.2 +0.6
root root sample 5; outgrowth in LB N.D. -0.3 +0.3 +0.9 -0.6
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.5 +0.2 -0.5 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.2 +0.1 +0.8 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.1 -0.4 +1.3
carbon source Octanoic (C) N.D. -0.3 +0.5 +0.3 +0.8
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.3 +0.1 +0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.3 +0.6 -0.3 -0.2
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