Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12485 and ABZR87_RS12490 are separated by 13 nucleotidesABZR87_RS12490 and ABZR87_RS12495 are separated by 128 nucleotidesABZR87_RS12495 and ABZR87_RS12500 are separated by 12 nucleotidesABZR87_RS12500 and ABZR87_RS12505 are separated by 100 nucleotides ABZR87_RS12485: ABZR87_RS12485 - folate-binding protein YgfZ, at 2,644,740 to 2,645,780 _RS12485 ABZR87_RS12490: ABZR87_RS12490 - DUF4936 family protein, at 2,645,794 to 2,646,084 _RS12490 ABZR87_RS12495: ABZR87_RS12495 - NRDE family protein, at 2,646,213 to 2,647,028 _RS12495 ABZR87_RS12500: ABZR87_RS12500 - sterol desaturase family protein, at 2,647,041 to 2,647,943 _RS12500 ABZR87_RS12505: ABZR87_RS12505 - LysR family transcriptional regulator, at 2,648,044 to 2,648,949 _RS12505
Group Condition ABZR87_RS12485 ABZR87_RS12490 ABZR87_RS12495 ABZR87_RS12500 ABZR87_RS12505
nitrogen source nitrogen source nitrate 20mM N.D. -1.4 -0.4 +0.1 -0.3
carbon source Octanoic (C) N.D. -1.4 -0.2 -0.3 +0.1
soil soil EcoFAB sample 2; outgrowth in LB N.D. -1.0 -0.4 -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.7 -0.6 +0.0 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.4 +0.0 -0.3
carbon source Sebacic (C) N.D. -0.6 -0.3 +0.1 -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.0 +0.2 +0.1 -0.3
root root sample 6; outgrowth in LB N.D. +0.3 -0.6 -0.5 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.4 +0.2 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.6 -0.3 -0.1 +0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.8 -0.5 -0.2 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.3 +0.3 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. +0.2 -0.8 -0.3 +0.3
root root EcoFAB sample 2; outgrowth in LB N.D. -0.3 -0.8 -0.1 +0.7
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.8 -0.4 -0.2 -0.7
carbon source acetate (C) N.D. -0.9 +0.2 +0.0 +0.2
root root sample 4; outgrowth in LB N.D. -0.5 -0.6 +0.1 +0.6
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.1 -0.5 -0.2 +0.5
root root sample 5; outgrowth in LB N.D. -0.9 +0.8 +0.2 -0.1
carbon source butyrate (C) N.D. -0.1 +0.5 +0.2 -0.5
carbon source Valeric (C) N.D. -0.3 +0.4 +0.3 -0.3
carbon source butyrate (C) N.D. -0.6 +0.5 +0.1 +0.2
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.3 -0.6 +0.4 +0.1
carbon source Octanoic (C) N.D. +0.2 +0.3 -0.5 +0.2
soil soil sample 2; outgrowth in LB N.D. +0.7 -0.5 -0.0 +0.1
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.7 -0.3 +0.1 +0.1
root root EcoFAB sample 1; outgrowth in LB N.D. +0.9 -0.4 -0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.8 -0.4 +0.4 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.8 +0.4 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +2.0 -0.5 +0.1 -0.6
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ABZR87_RS12490
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