Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12475 and ABZR87_RS12480 overlap by 4 nucleotidesABZR87_RS12480 and ABZR87_RS12485 are separated by 133 nucleotidesABZR87_RS12485 and ABZR87_RS12490 are separated by 13 nucleotidesABZR87_RS12490 and ABZR87_RS12495 are separated by 128 nucleotides ABZR87_RS12475: ABZR87_RS12475 - dTMP kinase, at 2,642,994 to 2,643,611 _RS12475 ABZR87_RS12480: ABZR87_RS12480 - endolytic transglycosylase MltG, at 2,643,608 to 2,644,606 _RS12480 ABZR87_RS12485: ABZR87_RS12485 - folate-binding protein YgfZ, at 2,644,740 to 2,645,780 _RS12485 ABZR87_RS12490: ABZR87_RS12490 - DUF4936 family protein, at 2,645,794 to 2,646,084 _RS12490 ABZR87_RS12495: ABZR87_RS12495 - NRDE family protein, at 2,646,213 to 2,647,028 _RS12495
Group Condition ABZR87_RS12475 ABZR87_RS12480 ABZR87_RS12485 ABZR87_RS12490 ABZR87_RS12495
carbon source Octanoic (C) N.D. -1.9 N.D. -1.4 -0.2
phage Ra3_1 N.D. -1.2 N.D. -0.9 +0.0
nitrogen source nitrogen source nitrate 20mM N.D. -0.0 N.D. -1.4 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.5 N.D. -0.7 -0.6
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.6 N.D. -1.0 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 N.D. -0.6 -0.4
root root EcoFAB sample 2; outgrowth in LB N.D. -0.1 N.D. -0.3 -0.8
soil soil EcoFAB sample 2; outgrowth in LB N.D. +0.2 N.D. -1.0 -0.4
carbon source Octanoic (C) N.D. -1.7 N.D. +0.2 +0.3
nitrogen source nitrogen source nitrite 1mM N.D. -0.5 N.D. +0.0 -0.7
soil soil EcoFAB sample 1; outgrowth in LB N.D. +0.3 N.D. -0.8 -0.5
root root sample 4; outgrowth in LB N.D. +0.2 N.D. -0.5 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.2 N.D. +0.2 -0.8
carbon source Pimelic (C) N.D. -0.4 N.D. -0.6 +0.2
carbon source Lauric (C) N.D. -0.8 N.D. -0.3 +0.4
carbon source acetate (C) N.D. +0.0 N.D. -0.9 +0.2
root root sample 6; outgrowth in LB N.D. -0.2 N.D. +0.3 -0.6
carbon source Sebacic (C) N.D. +0.6 N.D. -0.6 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 N.D. -0.5 -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.6 N.D. +0.8 -0.4
carbon source Carbon source D-Glucose 10 mM N.D. +0.5 N.D. -0.6 -0.1
soil soil sample 2; outgrowth in LB N.D. -0.2 N.D. +0.7 -0.5
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.3 N.D. +0.3 -0.6
carbon source butyrate (C) N.D. +0.3 N.D. -0.6 +0.5
root root sample 5; outgrowth in LB N.D. +0.4 N.D. -0.9 +0.8
root root EcoFAB sample 1; outgrowth in LB N.D. -0.1 N.D. +0.9 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 N.D. +0.8 -0.4
carbon source Protocatechuic Acid (C) N.D. +1.1 N.D. +0.0 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.0 N.D. +0.8 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 N.D. +2.0 -0.5
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