Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12460 and ABZR87_RS12465 are separated by 52 nucleotidesABZR87_RS12465 and ABZR87_RS12470 are separated by 42 nucleotidesABZR87_RS12470 and ABZR87_RS12475 are separated by 81 nucleotidesABZR87_RS12475 and ABZR87_RS12480 overlap by 4 nucleotides ABZR87_RS12460: ABZR87_RS12460 - TatD family hydrolase, at 2,640,584 to 2,641,387 _RS12460 ABZR87_RS12465: ABZR87_RS12465 - PilZ domain-containing protein, at 2,641,440 to 2,641,859 _RS12465 ABZR87_RS12470: ABZR87_RS12470 - DNA polymerase III subunit delta', at 2,641,902 to 2,642,912 _RS12470 ABZR87_RS12475: ABZR87_RS12475 - dTMP kinase, at 2,642,994 to 2,643,611 _RS12475 ABZR87_RS12480: ABZR87_RS12480 - endolytic transglycosylase MltG, at 2,643,608 to 2,644,606 _RS12480
Group Condition ABZR87_RS12460 ABZR87_RS12465 ABZR87_RS12470 ABZR87_RS12475 ABZR87_RS12480
carbon source Octanoic (C) -0.9 -0.2 N.D. N.D. -1.9
carbon source Octanoic (C) -1.0 -0.4 N.D. N.D. -1.7
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.5 -0.4 N.D. N.D. -0.6
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.5 -0.4 N.D. N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.7 N.D. N.D. +0.0
root root sample 5; outgrowth in LB -0.5 -1.0 N.D. N.D. +0.4
rhizosphere rhizosphere sample 4; outgrowth in LB -0.7 -0.4 N.D. N.D. +0.1
root root sample 6; outgrowth in LB +0.1 -0.9 N.D. N.D. -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.7 N.D. N.D. -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB -0.4 +0.2 N.D. N.D. -0.6
rhizosphere rhizosphere sample 6; outgrowth in LB -0.2 -0.7 N.D. N.D. +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 -0.4 N.D. N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.3 N.D. N.D. +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 N.D. N.D. -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 +0.3 N.D. N.D. -0.6
carbon source 4-Hydroxybenzoic Acid (C) -0.5 -0.2 N.D. N.D. +0.4
carbon source Dodecandioic (C) -0.6 -0.2 N.D. N.D. +0.5
carbon source Sebacic (C) -0.7 -0.1 N.D. N.D. +0.6
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.5 +0.5 N.D. N.D. -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -1.0 +1.4 N.D. N.D. -0.5
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.5 +0.9 N.D. N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.0 N.D. N.D. +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.4 +1.1 N.D. N.D. -0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.9 +1.3 N.D. N.D. +0.2
carbon source Protocatechuic Acid (C) -0.3 -0.2 N.D. N.D. +1.1
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +1.0 N.D. N.D. +0.3
phage Ra1_0.01 +0.1 +2.2 N.D. N.D. -0.5
phage Ra3_0.1 +0.0 +2.6 N.D. N.D. -0.8
phage Ra3_1 +0.0 +6.4 N.D. N.D. -1.2
phage Ra1_0.1 -0.1 +6.5 N.D. N.D. -0.7
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