Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12395 and ABZR87_RS12400 are separated by 42 nucleotidesABZR87_RS12400 and ABZR87_RS12405 are separated by 20 nucleotidesABZR87_RS12405 and ABZR87_RS12410 overlap by 12 nucleotidesABZR87_RS12410 and ABZR87_RS12415 are separated by 142 nucleotides ABZR87_RS12395: ABZR87_RS12395 - MFS transporter, at 2,626,575 to 2,627,876 _RS12395 ABZR87_RS12400: ABZR87_RS12400 - M20 aminoacylase family protein, at 2,627,919 to 2,629,130 _RS12400 ABZR87_RS12405: ABZR87_RS12405 - amidase, at 2,629,151 to 2,630,635 _RS12405 ABZR87_RS12410: ABZR87_RS12410 - LysR substrate-binding domain-containing protein, at 2,630,624 to 2,631,553 _RS12410 ABZR87_RS12415: ABZR87_RS12415 - NAD(P)H-dependent oxidoreductase, at 2,631,696 to 2,632,379 _RS12415
Group Condition ABZR87_RS12395 ABZR87_RS12400 ABZR87_RS12405 ABZR87_RS12410 ABZR87_RS12415
phage Ra1_0.1 +0.0 -0.1 -0.1 -0.6 -0.6
carbon source butyrate (C) -0.1 -0.7 +0.2 -0.1 -0.5
root root EcoFAB sample 2; outgrowth in LB -0.0 -0.9 +0.4 -0.1 -0.4
root root sample 5; outgrowth in LB -0.4 -0.5 -0.3 +0.1 +0.1
carbon source Octanoic (C) +0.1 -0.5 -0.1 +0.1 -0.5
soil soil sample 6; outgrowth in LB -0.0 -0.8 +0.1 +0.1 -0.3
carbon source Azelaic (C) -0.3 +0.4 -0.1 -0.5 -0.4
carbon source Sebacic (C) -0.1 -0.5 -0.4 +0.4 -0.3
soil soil EcoFAB sample 2; outgrowth in LB +0.1 +0.4 +0.1 -0.6 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 -0.2 -0.4 +0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 +0.7 -0.0 -0.1 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +1.4 +0.1 -0.7 -0.9
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 -0.6 +0.2 -0.0 +0.5
soil soil EcoFAB sample 1; outgrowth in LB -0.1 -0.2 +0.2 -0.6 +0.6
root root sample 6; outgrowth in LB +0.1 +0.5 -0.2 -0.3 +0.2
carbon source Dodecandioic (C) +0.1 -0.3 +0.2 +0.6 -0.2
carbon source Octanoic (C) +0.3 -0.6 +0.4 -0.4 +0.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 -0.2 +0.3 +0.5 -0.1
nitrogen source nitrogen source nitrite 5mM +0.2 +0.3 +0.2 -0.4 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.3 +0.3 -0.4 +0.3
nitrogen source nitrogen source nitrite 1mM -0.1 +0.2 +0.2 +0.4 -0.1
root root EcoFAB sample 1; outgrowth in LB -0.0 +1.0 +0.0 -0.0 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.7 -0.2 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.0 -0.0 +0.5 +0.5
root root sample 4; outgrowth in LB +0.1 +1.1 -0.0 -0.2 +0.3
carbon source Heptanoic (C) +0.0 +0.4 +0.1 +0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.6 +0.3 +1.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.4 +0.7 +0.2 +0.9 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 +0.2 +0.7 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.7 -0.0 +1.0 +0.4
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ABZR87_RS12395
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ABZR87_RS12400
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