Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12360 and ABZR87_RS12365 are separated by 21 nucleotidesABZR87_RS12365 and ABZR87_RS12370 are separated by 6 nucleotidesABZR87_RS12370 and ABZR87_RS12375 are separated by 291 nucleotidesABZR87_RS12375 and ABZR87_RS12380 are separated by 139 nucleotides ABZR87_RS12360: ABZR87_RS12360 - DUF817 domain-containing protein, at 2,620,921 to 2,621,772 _RS12360 ABZR87_RS12365: ABZR87_RS12365 - DUF1653 domain-containing protein, at 2,621,794 to 2,622,003 _RS12365 ABZR87_RS12370: ABZR87_RS12370 - hypothetical protein, at 2,622,010 to 2,622,357 _RS12370 ABZR87_RS12375: ABZR87_RS12375 - zinc ribbon domain-containing protein YjdM, at 2,622,649 to 2,622,987 _RS12375 ABZR87_RS12380: ABZR87_RS12380 - MFS transporter, at 2,623,127 to 2,624,338 _RS12380
Group Condition ABZR87_RS12360 ABZR87_RS12365 ABZR87_RS12370 ABZR87_RS12375 ABZR87_RS12380
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.0 -1.0 -0.2 -0.4
carbon source Azelaic (C) +0.1 -0.3 -1.0 -0.2 +0.3
carbon source Suberic (C) -0.0 -0.2 -0.9 -0.2 +0.3
carbon source Octanoic (C) -0.0 +0.1 -0.7 -0.4 +0.4
nitrogen source nitrogen source nitrite 0.5mM -0.4 +0.1 -0.4 -0.2 +0.4
nitrogen source nitrogen source nitrate 5mM -0.0 -0.3 +0.5 -0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 -0.5 +0.4 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -1.0 +0.6 -0.1 +0.4
rhizosphere rhizosphere sample 5; outgrowth in LB -0.1 -0.5 +0.8 -0.0 -0.0
soil soil sample 8; outgrowth in LB -0.0 -0.4 +0.5 -0.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 -0.2 -0.3 -0.0 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.4 +0.1 +0.5
soil soil sample 2; outgrowth in LB -0.1 -0.2 +0.8 +0.1 +0.0
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.6 +1.0 +0.3 -0.3
soil soil sample 1; outgrowth in LB -0.2 +0.1 +0.8 -0.0 +0.2
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 +0.1 +0.7 -0.2 +0.2
carbon source Dodecandioic (C) +0.1 +0.2 +0.5 +0.3 -0.3
soil soil sample 4; outgrowth in LB -0.1 -0.1 +1.2 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.9 -0.8 +0.9 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.3 -0.3 +0.8 +0.5
rhizosphere rhizosphere sample 7; outgrowth in LB -0.0 -0.2 +1.4 -0.2 +0.4
rhizosphere rhizosphere sample 4; outgrowth in LB -0.1 -0.0 +1.2 +0.1 +0.3
root root sample 5; outgrowth in LB +0.2 +0.3 +1.5 -0.3 -0.3
rhizosphere rhizosphere sample 8; outgrowth in LB -0.0 +0.0 +1.0 +0.1 +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 +0.2 +2.0 +0.2 -0.3
root root sample 4; outgrowth in LB +0.0 -0.2 +2.5 -0.2 +0.2
root root sample 6; outgrowth in LB +0.3 +0.9 +1.5 -0.2 +0.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.5 +2.6 +0.2 +0.4
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 +0.3 +2.5 +0.4 +0.7
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.1 +3.4 +0.1 +0.3
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