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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS12360 and ABZR87_RS12365 are separated by 21 nucleotides
ABZR87_RS12365 and ABZR87_RS12370 are separated by 6 nucleotides
ABZR87_RS12370 and ABZR87_RS12375 are separated by 291 nucleotides
ABZR87_RS12375 and ABZR87_RS12380 are separated by 139 nucleotides
ABZR87_RS12360: ABZR87_RS12360 - DUF817 domain-containing protein, at 2,620,921 to 2,621,772
_RS12360
ABZR87_RS12365: ABZR87_RS12365 - DUF1653 domain-containing protein, at 2,621,794 to 2,622,003
_RS12365
ABZR87_RS12370: ABZR87_RS12370 - hypothetical protein, at 2,622,010 to 2,622,357
_RS12370
ABZR87_RS12375: ABZR87_RS12375 - zinc ribbon domain-containing protein YjdM, at 2,622,649 to 2,622,987
_RS12375
ABZR87_RS12380: ABZR87_RS12380 - MFS transporter, at 2,623,127 to 2,624,338
_RS12380
Group
Condition
ABZR87
_RS12360
ABZR87
_RS12365
ABZR87
_RS12370
ABZR87
_RS12375
ABZR87
_RS12380
no plant control
Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.1
-0.0
-1.0
-0.2
-0.4
carbon source
Azelaic (C)
+0.1
-0.3
-1.0
-0.2
+0.3
carbon source
Suberic (C)
-0.0
-0.2
-0.9
-0.2
+0.3
carbon source
Octanoic (C)
-0.0
+0.1
-0.7
-0.4
+0.4
nitrogen source
nitrogen source nitrite 0.5mM
-0.4
+0.1
-0.4
-0.2
+0.4
nitrogen source
nitrogen source nitrate 5mM
-0.0
-0.3
+0.5
-0.5
-0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
+0.2
-0.5
+0.4
-0.1
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
+0.0
-1.0
+0.6
-0.1
+0.4
rhizosphere
rhizosphere sample 5; outgrowth in LB
-0.1
-0.5
+0.8
-0.0
-0.0
soil
soil sample 8; outgrowth in LB
-0.0
-0.4
+0.5
-0.2
+0.1
no_plant_rhizosphere
no_plant_rhizosphere sample 2; outgrowth in LB
-0.0
-0.2
-0.3
-0.0
+0.8
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.1
+0.1
-0.4
+0.1
+0.5
soil
soil sample 2; outgrowth in LB
-0.1
-0.2
+0.8
+0.1
+0.0
root
root EcoFAB sample 2; outgrowth in LB
+0.3
-0.6
+1.0
+0.3
-0.3
soil
soil sample 1; outgrowth in LB
-0.2
+0.1
+0.8
-0.0
+0.2
rhizosphere
rhizosphere sample 6; outgrowth in LB
-0.0
+0.1
+0.7
-0.2
+0.2
carbon source
Dodecandioic (C)
+0.1
+0.2
+0.5
+0.3
-0.3
soil
soil sample 4; outgrowth in LB
-0.1
-0.1
+1.2
-0.1
+0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.3
+0.9
-0.8
+0.9
-0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.0
+0.3
-0.3
+0.8
+0.5
rhizosphere
rhizosphere sample 7; outgrowth in LB
-0.0
-0.2
+1.4
-0.2
+0.4
rhizosphere
rhizosphere sample 4; outgrowth in LB
-0.1
-0.0
+1.2
+0.1
+0.3
root
root sample 5; outgrowth in LB
+0.2
+0.3
+1.5
-0.3
-0.3
rhizosphere
rhizosphere sample 8; outgrowth in LB
-0.0
+0.0
+1.0
+0.1
+0.4
rhizosphere
rhizosphere sample 1; outgrowth in LB
-0.1
+0.2
+2.0
+0.2
-0.3
root
root sample 4; outgrowth in LB
+0.0
-0.2
+2.5
-0.2
+0.2
root
root sample 6; outgrowth in LB
+0.3
+0.9
+1.5
-0.2
+0.4
rhizosphere
rhizosphere sample 2; outgrowth in LB
+0.1
-0.5
+2.6
+0.2
+0.4
rhizosphere
rhizosphere sample 3; outgrowth in LB
-0.4
+0.3
+2.5
+0.4
+0.7
rhizosphere
rhizosphere sample 9; outgrowth in LB
-0.1
-0.1
+3.4
+0.1
+0.3
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