Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12200 and ABZR87_RS12205 are separated by 78 nucleotidesABZR87_RS12205 and ABZR87_RS12210 are separated by 215 nucleotidesABZR87_RS12210 and ABZR87_RS12215 are separated by 99 nucleotidesABZR87_RS12215 and ABZR87_RS12220 are separated by 18 nucleotides ABZR87_RS12200: ABZR87_RS12200 - DUF2252 family protein, at 2,586,709 to 2,587,935 _RS12200 ABZR87_RS12205: ABZR87_RS12205 - 3-deoxy-7-phosphoheptulonate synthase, at 2,588,014 to 2,589,144 _RS12205 ABZR87_RS12210: ABZR87_RS12210 - methyl-accepting chemotaxis protein, at 2,589,360 to 2,590,901 _RS12210 ABZR87_RS12215: ABZR87_RS12215 - hypothetical protein, at 2,591,001 to 2,591,468 _RS12215 ABZR87_RS12220: ABZR87_RS12220 - MgtC/SapB family protein, at 2,591,487 to 2,592,209 _RS12220
Group Condition ABZR87_RS12200 ABZR87_RS12205 ABZR87_RS12210 ABZR87_RS12215 ABZR87_RS12220
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 -0.0 +0.1 +0.0 -5.0
micoeukaryotes C.elegans, mixed culture-2 -0.0 -0.0 +0.1 +0.0 -3.1
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 +0.2 +0.0 +0.1 -2.9
micoeukaryotes C.elegans, mixed culture-1 +0.0 +0.2 +0.0 -0.1 -2.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 -0.1 -0.2 -0.8 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 -0.2 -0.7 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.0 -0.0 -1.0 -0.4
root root sample 6; outgrowth in LB +0.1 -0.1 +0.0 -1.0 -0.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.0 -0.2 -0.7 -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB +0.2 -0.3 -0.4 -0.2 -0.4
carbon source Octanoic (C) +0.3 +0.2 -0.5 -0.5 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.4 -0.4 -0.6 -0.3
carbon source D-Galactose (C) +0.1 -0.0 -0.4 -0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.4 +0.3 -0.4 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 -0.4 -0.6 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.1 -0.6 -0.6 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 +0.2 -0.8 -0.5
nitrogen source nitrogen source nitrite 0.5mM +0.5 -0.1 -0.3 -0.5 -0.3
carbon source acetate (C) +0.1 +0.1 -0.2 -0.6 -0.1
control NoPredeControl +0.1 +0.1 +0.0 +0.0 -0.9
soil soil EcoFAB sample 1; outgrowth in LB -0.2 -0.2 +0.3 +0.1 -0.5
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 -0.1 +0.3 -0.2 -0.5
root root EcoFAB sample 1; outgrowth in LB +0.4 -0.0 +0.0 -0.7 +0.1
nitrogen source nitrogen source Ammonium chloride 20mM -0.2 +0.0 +0.4 -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.4 -0.3 -0.5 +0.2
carbon source Pimelic (C) +0.2 +0.2 -0.4 +0.2 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.3 +0.3 +0.7 -0.5 -0.5
root root sample 5; outgrowth in LB +0.3 +0.3 +0.5 +0.3 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +0.7 -0.4 +0.2
phage Ra3_1 +0.2 +0.3 -0.0 +0.8 -0.0
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ABZR87_RS12200
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