Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12120 and ABZR87_RS12125 are separated by 23 nucleotidesABZR87_RS12125 and ABZR87_RS12130 are separated by 9 nucleotidesABZR87_RS12130 and ABZR87_RS12135 are separated by 148 nucleotidesABZR87_RS12135 and ABZR87_RS12140 overlap by 4 nucleotides ABZR87_RS12120: ABZR87_RS12120 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 2,571,484 to 2,572,311 _RS12120 ABZR87_RS12125: ABZR87_RS12125 - DsbA family protein, at 2,572,335 to 2,572,505 _RS12125 ABZR87_RS12130: ABZR87_RS12130 - LysR substrate-binding domain-containing protein, at 2,572,515 to 2,573,432 _RS12130 ABZR87_RS12135: ABZR87_RS12135 - MFS transporter, at 2,573,581 to 2,574,798 _RS12135 ABZR87_RS12140: ABZR87_RS12140 - hypothetical protein, at 2,574,795 to 2,574,923 _RS12140
Group Condition ABZR87_RS12120 ABZR87_RS12125 ABZR87_RS12130 ABZR87_RS12135 ABZR87_RS12140
carbon source Sebacic (C) -2.2 N.D. -3.4 -0.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -2.6 N.D. -0.2 -0.0 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -1.7 N.D. -0.7 +0.0 N.D.
carbon source Octanoic (C) -1.9 N.D. +0.0 -0.0 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.6 N.D. -0.3 +0.2 N.D.
soil soil sample 3; outgrowth in LB -1.6 N.D. +0.3 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 N.D. +1.1 -0.5 N.D.
carbon source Octanoic (C) -1.8 N.D. +0.5 +0.2 N.D.
soil soil sample 9; outgrowth in LB -1.7 N.D. +1.0 -0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 N.D. +1.2 -0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.3 N.D. +0.4 +0.1 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB +1.2 N.D. -1.0 -0.1 N.D.
carbon source butyrate (C) -0.6 N.D. +1.2 -0.0 N.D.
root root EcoFAB sample 1; outgrowth in LB +1.3 N.D. -0.8 +0.1 N.D.
soil soil sample 7; outgrowth in LB +1.3 N.D. -0.3 -0.0 N.D.
nitrogen source nitrogen source nitrate 5mM +1.3 N.D. -0.3 +0.1 N.D.
carbon source Carbon source D-Glucose 10 mM +1.4 N.D. -0.5 +0.2 N.D.
nitrogen source nitrogen source nitrite 5mM +1.5 N.D. -0.3 +0.1 N.D.
carbon source Valeric (C) +0.7 N.D. +0.8 -0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.9 N.D. +0.9 -0.2 N.D.
phage Ra3_0.01 +0.5 N.D. +0.9 +0.2 N.D.
root root sample 4; outgrowth in LB +0.8 N.D. +0.8 +0.0 N.D.
nitrogen source nitrogen source nitrite 5mM +1.4 N.D. +0.5 -0.0 N.D.
soil soil sample 6; outgrowth in LB +1.3 N.D. +0.6 +0.0 N.D.
nitrogen source nitrogen source nitrite 0.5mM +1.1 N.D. +0.9 -0.0 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM +1.4 N.D. +1.1 -0.1 N.D.
nitrogen source nitrogen source nitrate 5mM +1.8 N.D. +0.7 +0.0 N.D.
root root sample 6; outgrowth in LB +1.6 N.D. +1.1 +0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 N.D. +2.3 -0.3 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +1.3 N.D. +1.7 +0.2 N.D.
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