Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12080 and ABZR87_RS12085 are separated by 93 nucleotidesABZR87_RS12085 and ABZR87_RS12090 overlap by 1 nucleotidesABZR87_RS12090 and ABZR87_RS12095 are separated by 61 nucleotidesABZR87_RS12095 and ABZR87_RS12100 are separated by 11 nucleotides ABZR87_RS12080: ABZR87_RS12080 - pca operon transcription factor PcaQ, at 2,564,409 to 2,565,353 _RS12080 ABZR87_RS12085: ABZR87_RS12085 - protocatechuate 3,4-dioxygenase subunit beta, at 2,565,447 to 2,566,196 _RS12085 ABZR87_RS12090: ABZR87_RS12090 - protocatechuate 3,4-dioxygenase subunit alpha, at 2,566,196 to 2,566,891 _RS12090 ABZR87_RS12095: ABZR87_RS12095 - RNA 2',3'-cyclic phosphodiesterase, at 2,566,953 to 2,567,621 _RS12095 ABZR87_RS12100: ABZR87_RS12100 - DsbA family protein, at 2,567,633 to 2,568,328 _RS12100
Group Condition ABZR87_RS12080 ABZR87_RS12085 ABZR87_RS12090 ABZR87_RS12095 ABZR87_RS12100
carbon source Protocatechuic Acid (C) -4.4 -6.1 -6.2 -0.4 -0.0
carbon source 4-Hydroxybenzoic Acid (C) -6.2 -5.2 -5.0 -0.5 -0.3
carbon source Protocatechuic Acid (C) -5.7 -6.0 -5.0 -0.0 +0.2
carbon source Protocatechuic Acid (C) -3.5 -5.2 -5.9 +0.1 -0.6
carbon source Protocatechuic Acid (C) -2.0 -4.3 -4.3 -0.1 +0.0
carbon source Protocatechuic Acid (C) -1.5 -3.1 -3.4 -0.3 +0.3
rhizosphere rhizosphere sample 9; outgrowth in LB -0.9 +0.0 -0.5 -0.6 -0.1
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.1 +0.0 -0.2 -1.9
root root sample 5; outgrowth in LB +0.8 -0.1 -0.8 -0.3 -1.1
soil soil sample 4; outgrowth in LB +0.4 -0.1 -0.3 -0.5 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.9 +0.3 -0.2 -0.1 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 +0.0 -1.2 +0.1 -0.2
root root sample 4; outgrowth in LB +0.3 -0.0 -0.1 -0.5 -0.5
root root sample 6; outgrowth in LB -0.1 +0.0 +0.3 -1.2 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 -0.1 -1.1 -0.1 +0.7
carbon source Octanoic (C) -0.6 +0.3 -0.4 +0.3 -0.1
phage Ra3_1 +0.5 +0.1 -0.6 -0.2 +0.4
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +0.0 +0.5 -0.5 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 +0.3 +0.5 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.0 -0.0 +0.7 -0.4
phage Ra1_0.1 +0.4 +0.0 -0.3 -0.2 +0.6
carbon source Suberic (C) +0.1 +0.1 -0.2 -0.1 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.3 -0.2 +0.3 +0.7
carbon source Azelaic (C) +0.7 +0.1 +0.0 +0.3 +0.2
nitrogen source nitrogen source nitrite 1mM +0.3 +0.3 -0.0 +0.2 +0.9
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.5 +0.2 +0.2 -0.5 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 -0.3 +1.0 +0.7
carbon source Octanoic (C) +0.4 +0.1 -0.0 +0.8 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 +0.7 +0.9 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.4 -0.1 +0.2 +0.5 +0.2
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ABZR87_RS12085
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