Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS12020 and ABZR87_RS12025 are separated by 246 nucleotidesABZR87_RS12025 and ABZR87_RS12030 overlap by 8 nucleotidesABZR87_RS12030 and ABZR87_RS12035 are separated by 35 nucleotidesABZR87_RS12035 and ABZR87_RS12040 are separated by 141 nucleotides ABZR87_RS12020: ABZR87_RS12020 - FadR/GntR family transcriptional regulator, at 2,551,962 to 2,552,669 _RS12020 ABZR87_RS12025: ABZR87_RS12025 - sugar ABC transporter ATP-binding protein, at 2,552,916 to 2,554,472 _RS12025 ABZR87_RS12030: ABZR87_RS12030 - ABC transporter permease, at 2,554,465 to 2,555,496 _RS12030 ABZR87_RS12035: ABZR87_RS12035 - ABC transporter substrate-binding protein, at 2,555,532 to 2,556,479 _RS12035 ABZR87_RS12040: ABZR87_RS12040 - SDR family oxidoreductase, at 2,556,621 to 2,557,370 _RS12040
Group Condition ABZR87_RS12020 ABZR87_RS12025 ABZR87_RS12030 ABZR87_RS12035 ABZR87_RS12040
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.2 +0.0 -0.6 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.1 -0.6 -0.1 -0.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.1 -0.3 -0.0 -0.5
carbon source butyrate (C) N.D. -0.0 -0.4 +0.3 -0.5
soil soil sample 8; outgrowth in LB N.D. -0.1 +0.2 -0.3 -0.5
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.2 +0.4 -0.2 -0.7
carbon source Octanoic (C) N.D. -0.6 +0.0 +0.1 -0.2
soil soil sample 1; outgrowth in LB N.D. +0.0 -0.1 +0.2 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 +0.2 -0.2 -0.7
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +0.2 -0.0 -0.5 -0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +0.0 +0.3 +0.1 -0.8
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.2 -0.2 -0.2 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.2 +0.1 -0.5 +0.2
control NoPredeControl N.D. +0.1 +0.2 -0.1 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.3 -0.5 +0.0 -0.0
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.2 +0.0 +0.2 -0.5
root root EcoFAB sample 2; outgrowth in LB N.D. +0.1 +0.1 +0.3 -0.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.2 -0.3 -0.3 +0.3
phage Ra3_1 N.D. +0.0 +0.5 +0.0 -0.6
carbon source Azelaic (C) N.D. -0.4 +0.2 +0.3 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +0.1 +0.3 +0.2 -0.3
root root sample 6; outgrowth in LB N.D. +0.3 -0.3 +0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 +0.3 -0.1 +0.5
phage Ra1_0.1 N.D. +0.0 +0.5 -0.1 +0.3
carbon source Octanoic (C) N.D. -0.1 -0.2 +0.3 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 -0.1 +0.4 +0.5
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.4 -0.0 +0.1 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 -0.1 +0.2 +1.0
root root sample 4; outgrowth in LB N.D. +0.5 +0.2 +0.2 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 +0.8 +0.1 +0.7
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