Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11965 and ABZR87_RS11970 are separated by 123 nucleotidesABZR87_RS11970 and ABZR87_RS11975 overlap by 26 nucleotidesABZR87_RS11975 and ABZR87_RS11980 are separated by 270 nucleotidesABZR87_RS11980 and ABZR87_RS11985 are separated by 76 nucleotides ABZR87_RS11965: ABZR87_RS11965 - IMP dehydrogenase, at 2,540,046 to 2,541,509 _RS11965 ABZR87_RS11970: ABZR87_RS11970 - hypothetical protein, at 2,541,633 to 2,542,211 _RS11970 ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805 _RS11975 ABZR87_RS11980: ABZR87_RS11980 - cold-shock protein, at 2,544,076 to 2,544,279 _RS11980 ABZR87_RS11985: ABZR87_RS11985 - DUF5074 domain-containing protein, at 2,544,356 to 2,545,000 _RS11985
Group Condition ABZR87_RS11965 ABZR87_RS11970 ABZR87_RS11975 ABZR87_RS11980 ABZR87_RS11985
root root sample 6; outgrowth in LB N.D. -3.1 N.D. -2.9 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -4.7 N.D. +0.6 -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 N.D. -4.7 +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. -1.5 N.D. -1.8 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.3 N.D. -3.5 +0.1
carbon source Octanoic (C) N.D. +0.5 N.D. -3.8 -0.3
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -0.5 N.D. -3.2 +0.1
soil soil sample 6; outgrowth in LB N.D. -0.5 N.D. -2.3 +0.3
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.1 N.D. -0.7 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.3 N.D. -0.9 +0.3
carbon source D-Galactose (C) N.D. -0.3 N.D. -1.4 -0.2
soil soil EcoFAB sample 2; outgrowth in LB N.D. -1.7 N.D. +0.2 -0.3
root root EcoFAB sample 2; outgrowth in LB N.D. -1.7 N.D. +0.1 +0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.7 N.D. -0.9 +0.2
root root sample 4; outgrowth in LB N.D. +0.3 N.D. -1.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 N.D. -1.9 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -1.2 N.D. +0.4 +0.1
carbon source Protocatechuic Acid (C) N.D. -1.0 N.D. +0.5 -0.1
carbon source Sebacic (C) N.D. -0.7 N.D. +0.9 -0.6
carbon source Lauric (C) N.D. -0.9 N.D. +0.7 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.9 N.D. -1.1 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +1.1 N.D. -1.2 -0.1
carbon source L-Glutamic (C) N.D. -0.9 N.D. +0.6 +0.2
carbon source Trans-2-methyl-2-butenoic (C) N.D. -0.4 N.D. +1.0 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 N.D. -0.6 +0.5
nitrogen source nitrogen source nitrate 5mM N.D. -0.6 N.D. +1.4 -0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. -1.1 N.D. +1.9 +0.1
nitrogen source nitrogen source nitrite 5mM N.D. +0.6 N.D. +0.9 -0.5
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.3 N.D. +1.3 -0.3
nitrogen source nitrogen source nitrate 20mM N.D. +0.7 N.D. +0.9 +0.0
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