Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11960 and ABZR87_RS11965 are separated by 154 nucleotidesABZR87_RS11965 and ABZR87_RS11970 are separated by 123 nucleotidesABZR87_RS11970 and ABZR87_RS11975 overlap by 26 nucleotidesABZR87_RS11975 and ABZR87_RS11980 are separated by 270 nucleotides ABZR87_RS11960: ABZR87_RS11960 - DMT family transporter, at 2,538,947 to 2,539,891 _RS11960 ABZR87_RS11965: ABZR87_RS11965 - IMP dehydrogenase, at 2,540,046 to 2,541,509 _RS11965 ABZR87_RS11970: ABZR87_RS11970 - hypothetical protein, at 2,541,633 to 2,542,211 _RS11970 ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805 _RS11975 ABZR87_RS11980: ABZR87_RS11980 - cold-shock protein, at 2,544,076 to 2,544,279 _RS11980
Group Condition ABZR87_RS11960 ABZR87_RS11965 ABZR87_RS11970 ABZR87_RS11975 ABZR87_RS11980
root root sample 6; outgrowth in LB +0.2 N.D. -3.1 N.D. -2.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 N.D. -0.7 N.D. -4.7
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 N.D. -4.7 N.D. +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 N.D. -0.3 N.D. -3.5
rhizosphere rhizosphere sample 7; outgrowth in LB -0.0 N.D. -0.5 N.D. -3.2
carbon source Octanoic (C) -0.1 N.D. +0.5 N.D. -3.8
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 N.D. -1.5 N.D. -1.8
soil soil sample 6; outgrowth in LB +0.1 N.D. -0.5 N.D. -2.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 N.D. -1.3 N.D. -0.9
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 N.D. -1.1 N.D. -0.7
carbon source D-Galactose (C) +0.0 N.D. -0.3 N.D. -1.4
root root EcoFAB sample 2; outgrowth in LB -0.0 N.D. -1.7 N.D. +0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.0 N.D. -1.7 N.D. +0.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.1 N.D. -0.7 N.D. -0.9
carbon source Disodium Glutarate (C) +0.2 N.D. -0.5 N.D. -1.0
root root sample 4; outgrowth in LB -0.2 N.D. +0.3 N.D. -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 N.D. +0.6 N.D. -1.9
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 N.D. -1.2 N.D. +0.4
carbon source Valeric (C) -0.1 N.D. -1.0 N.D. +0.5
carbon source Lauric (C) +0.1 N.D. -0.9 N.D. +0.7
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 N.D. +1.1 N.D. -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. +0.9 N.D. -1.1
carbon source Sebacic (C) -0.1 N.D. -0.7 N.D. +0.9
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. +0.6 N.D. -0.6
soil soil EcoFAB sample 1; outgrowth in LB -0.1 N.D. -1.1 N.D. +1.9
carbon source 3-Hydroxypropionate (C) +0.1 N.D. -0.3 N.D. +1.1
nitrogen source nitrogen source nitrate 5mM +0.1 N.D. -0.6 N.D. +1.4
nitrogen source nitrogen source nitrite 5mM +0.0 N.D. +0.6 N.D. +0.9
nitrogen source nitrogen source nitrate 20mM +0.0 N.D. +0.7 N.D. +0.9
nitrogen source nitrogen source nitrite 0.5mM +0.2 N.D. +0.3 N.D. +1.3
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