Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11955 and ABZR87_RS11960 are separated by 154 nucleotidesABZR87_RS11960 and ABZR87_RS11965 are separated by 154 nucleotidesABZR87_RS11965 and ABZR87_RS11970 are separated by 123 nucleotidesABZR87_RS11970 and ABZR87_RS11975 overlap by 26 nucleotides ABZR87_RS11955: ABZR87_RS11955 - DUF4124 domain-containing protein, at 2,538,253 to 2,538,792 _RS11955 ABZR87_RS11960: ABZR87_RS11960 - DMT family transporter, at 2,538,947 to 2,539,891 _RS11960 ABZR87_RS11965: ABZR87_RS11965 - IMP dehydrogenase, at 2,540,046 to 2,541,509 _RS11965 ABZR87_RS11970: ABZR87_RS11970 - hypothetical protein, at 2,541,633 to 2,542,211 _RS11970 ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805 _RS11975
Group Condition ABZR87_RS11955 ABZR87_RS11960 ABZR87_RS11965 ABZR87_RS11970 ABZR87_RS11975
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.4 -0.0 N.D. -4.7 N.D.
root root sample 6; outgrowth in LB -0.4 +0.2 N.D. -3.1 N.D.
root root EcoFAB sample 2; outgrowth in LB -0.3 -0.0 N.D. -1.7 N.D.
rhizosphere rhizosphere sample 6; outgrowth in LB -0.1 -0.0 N.D. -1.5 N.D.
soil soil EcoFAB sample 2; outgrowth in LB +0.1 +0.0 N.D. -1.7 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.2 N.D. -1.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 N.D. -1.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 +0.0 N.D. -1.1 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.0 -0.1 N.D. -1.1 N.D.
carbon source Beta-alanine (C) -0.3 -0.1 N.D. -0.7 N.D.
carbon source Azelaic (C) -0.1 +0.1 N.D. -1.0 N.D.
carbon source Protocatechuic Acid (C) -0.1 -0.0 N.D. -1.0 N.D.
carbon source Lauric (C) -0.1 +0.1 N.D. -0.9 N.D.
carbon source Valeric (C) +0.1 -0.1 N.D. -1.0 N.D.
carbon source L-Glutamic (C) -0.1 -0.0 N.D. -0.9 N.D.
carbon source D-Glucose (C) -0.1 +0.0 N.D. -0.9 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 -0.0 N.D. -0.5 N.D.
soil soil sample 6; outgrowth in LB -0.3 +0.1 N.D. -0.5 N.D.
carbon source Suberic (C) +0.2 +0.1 N.D. -0.7 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.6 -0.1 N.D. +0.6 N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.2 -0.1 N.D. +0.9 N.D.
phage Ra3_0.01 +0.2 -0.1 N.D. +0.7 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.1 N.D. +1.1 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 N.D. +0.6 N.D.
carbon source Protocatechuic Acid (C) +0.0 +0.2 N.D. +0.8 N.D.
carbon source propionate (C) +0.0 +0.2 N.D. +0.8 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 N.D. +0.9 N.D.
phage Ra1_0.1 +0.7 -0.0 N.D. +0.4 N.D.
nitrogen source nitrogen source nitrite 1mM +0.1 +0.1 N.D. +1.0 N.D.
phage Ra3_1 +0.8 -0.0 N.D. +0.5 N.D.
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