Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11890 and ABZR87_RS11895 are separated by 4 nucleotidesABZR87_RS11895 and ABZR87_RS11900 are separated by 22 nucleotidesABZR87_RS11900 and ABZR87_RS11905 are separated by 142 nucleotidesABZR87_RS11905 and ABZR87_RS11910 are separated by 17 nucleotides ABZR87_RS11890: ABZR87_RS11890 - lipid-A-disaccharide synthase, at 2,525,309 to 2,526,442 _RS11890 ABZR87_RS11895: ABZR87_RS11895 - ribonuclease HII, at 2,526,447 to 2,527,145 _RS11895 ABZR87_RS11900: ABZR87_RS11900 - RNA methyltransferase, at 2,527,168 to 2,527,950 _RS11900 ABZR87_RS11905: ABZR87_RS11905 - M24 family metallopeptidase, at 2,528,093 to 2,528,968 _RS11905 ABZR87_RS11910: ABZR87_RS11910 - SDR family oxidoreductase, at 2,528,986 to 2,530,794 _RS11910
Group Condition ABZR87_RS11890 ABZR87_RS11895 ABZR87_RS11900 ABZR87_RS11905 ABZR87_RS11910
root root sample 6; outgrowth in LB N.D. +0.5 -0.8 -1.0 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 +0.3 -0.8 -0.1
carbon source Disodium Glutarate (C) N.D. -0.7 -0.0 -0.5 -0.0
nitrogen source nitrogen source nitrate 5mM N.D. -1.0 -0.5 +0.4 -0.0
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.6 -0.9 +0.3 +0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 +0.4 -1.6 +0.4
root root sample 4; outgrowth in LB N.D. -0.5 -0.5 +0.0 +0.3
carbon source Carbon source D-Glucose 10 mM N.D. -0.8 +0.4 -0.2 +0.1
root root EcoFAB sample 2; outgrowth in LB N.D. +0.2 -1.1 +0.3 +0.1
carbon source Heptanoic (C) N.D. -0.5 -0.4 +0.6 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.3 -0.2 -0.6 +0.3
carbon source propionate (C) N.D. -0.5 -0.1 +0.7 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +0.6 -0.6 -0.0 +0.3
carbon source butyrate (C) N.D. -0.4 +0.2 +0.7 -0.0
carbon source Hexanoic (C) N.D. -0.3 -0.2 +0.8 +0.1
carbon source Suberic (C) N.D. -0.5 +0.3 +0.7 +0.0
carbon source L-Glutamic (C) N.D. -0.5 +0.1 +0.9 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.0 +0.2 -0.6 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 +2.0 -1.2 -0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +0.3 -0.4 +0.8 +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.7 +0.6 +0.8 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.0 +0.2 -0.6 +0.2
soil soil sample 9; outgrowth in LB N.D. +0.4 -0.2 +0.7 -0.1
nitrogen source nitrogen source nitrite 5mM N.D. -0.4 +0.2 +1.0 +0.1
root root sample 5; outgrowth in LB N.D. +0.5 -0.8 +1.1 +0.1
carbon source Dodecandioic (C) N.D. -0.2 +0.3 +0.9 -0.0
carbon source butyrate (C) N.D. -0.0 +0.2 +1.0 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.7 +0.1 +0.6 -0.1
carbon source Octanoic (C) N.D. +0.9 -0.3 +1.0 +0.2
carbon source Octanoic (C) N.D. +0.5 -0.1 +1.7 +0.3
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ABZR87_RS11895
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