Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11730 and ABZR87_RS11735 are separated by 325 nucleotidesABZR87_RS11735 and ABZR87_RS11740 are separated by 320 nucleotidesABZR87_RS11740 and ABZR87_RS11745 are separated by 17 nucleotidesABZR87_RS11745 and ABZR87_RS11750 are separated by 10 nucleotides ABZR87_RS11730: ABZR87_RS11730 - M55 family metallopeptidase, at 2,487,403 to 2,488,218 _RS11730 ABZR87_RS11735: ABZR87_RS11735 - chitin-binding domain-containing protein, at 2,488,544 to 2,488,909 _RS11735 ABZR87_RS11740: ABZR87_RS11740 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 2,489,230 to 2,490,132 _RS11740 ABZR87_RS11745: ABZR87_RS11745 - class IV adenylate cyclase, at 2,490,150 to 2,490,668 _RS11745 ABZR87_RS11750: ABZR87_RS11750 - succinyl-diaminopimelate desuccinylase, at 2,490,679 to 2,491,830 _RS11750
Group Condition ABZR87_RS11730 ABZR87_RS11735 ABZR87_RS11740 ABZR87_RS11745 ABZR87_RS11750
rhizosphere rhizosphere sample 2; outgrowth in LB -0.8 -1.2 +0.1 -0.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 -2.6 +0.1 +0.3 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -1.2 -1.2 +0.3 -0.0 N.D.
carbon source Azelaic (C) +0.1 -2.6 -0.0 +0.5 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.8 -0.1 -0.7 N.D.
root root sample 4; outgrowth in LB +0.1 -2.1 +0.0 +0.3 N.D.
soil soil sample 1; outgrowth in LB -0.8 -1.0 -0.0 +0.2 N.D.
root root sample 6; outgrowth in LB -1.4 -0.5 -0.2 +0.6 N.D.
carbon source L-Glutamic (C) -0.3 -1.3 -0.1 +0.3 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.3 -0.9 -0.1 +0.1 N.D.
carbon source Protocatechuic Acid (C) -0.8 -0.9 +0.3 +0.3 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.7 +0.3 -0.3 -0.2 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.1 -0.4 +0.2 +0.4 N.D.
root root sample 5; outgrowth in LB -2.1 +0.5 +0.4 +0.4 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -1.0 -0.2 -0.1 N.D.
soil soil sample 9; outgrowth in LB -0.3 -0.9 +0.2 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.8 +0.1 -0.5 N.D.
carbon source Sebacic (C) -0.2 -0.8 +0.3 +0.2 N.D.
carbon source propionate (C) -0.6 +0.4 +0.2 -0.3 N.D.
soil soil sample 3; outgrowth in LB -0.5 -0.3 +0.2 +0.4 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB -0.7 -0.1 +0.5 +0.2 N.D.
carbon source D-Galactose (C) -0.5 +0.8 +0.1 -0.2 N.D.
carbon source butyrate (C) -0.7 +0.7 +0.7 -0.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +1.2 +0.2 -0.4 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.3 +0.9 -0.1 -0.3 N.D.
carbon source Dodecandioic (C) -0.8 +1.1 +0.3 +0.2 N.D.
rhizosphere rhizosphere sample 6; outgrowth in LB +0.2 +0.8 +0.1 +0.4 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.8 +0.1 +0.3 +0.3 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.7 +0.8 +0.2 +0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +2.2 -0.0 -0.1 N.D.
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